Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01078 ATGGCTGAGGGTTTTGAGGCTTACCATGTGCCACAGCAAAGCAGAAGAGATAAGCTAAGAGTCGTGGTGACACAGAACCAACATGGTCTCGTTGAACCCTCCACTTTGCTTCCTTTGTACGACCCTTCTTCGTTCATATCTTCTGATTTGCTAACGAGCTTCCACAACAGCCACAAACACAACTTGGGTTGTGGCGTGAAGGAAGAACGTGCAAATTTGATGATGGGTTTTGCAGGCAGAGGAGGTGAAGGTGGAGGAGTCATGAACAATGGCTCTTCTTCTTCTTTGTGTTGTTCTTCTAACTCCTCTTCGGTTTCTTATTTGGATCCTGAATCCTCGTTGCCTCTGAACCAAGCTACAATTCAGGTCATTAACAACAACAACAACATGTTTCTTTACCAAGCACAGAACCTGGGAGAGTTTGACCAGGGTTATAATAATAATAATGGTAGTGAGATCATGGTGTTTAAGCCTGAGCCTTTGTCTTTGTCTCTCTCATCAAATAGCAACGGTGTGAATCTTCAGCGATATGGATCTGTGGTTTGTGGTGATAAGGTTAGTGGGGTTGGTGGCGGTGGTGGATGTGTGGTTTATGGTGGTTCTGGATTGAATGAAGCTTCTAGGTGCACGGTGCCTATGGGGCCATTTACTGGTTATGCTTCTATATTGAAGGGATCGAGGTTCCTGAAACCTGCACAGCAATTATTGGAAGAGTTATGTGATGTTGGTGGAGTCTGTGCTGAAAAGATGGTGGCTGATGCATCATTGATGGAACCTGTTCCTCTTCCTCCTCCTGAAAATTCAAGTGAAGATCTACTAGGGGATCACGGGGGTGACCATGGTCGGAAAAAGTCAAGACTGTTAACTATGCTTGACGAGGTTTACAGGAGGTACAGGCAATACTATCAGCAGATGCACGCAGTAGTAACATCATTTGAGTATGTTTCAGGCCTTCGCAATGCAGCTCCCTATGCAAGTTTGGCAATAAAAGCCATGTCCAAACATTTTAGATGCTTGAAGAATGCAATTACTGACCAACTTCAGTTTGCCAATAAAGCTCATTTTCACATCAGCAACAGGAAGGATGAATCTTCAAGGTTTGGCAACAGTGATAGAGGCCCTTACAGCCAAAGGCCAGGGTTTCTTGAGCACCAACCTGTTTGGCGGCCTCAAAGAGGACTCCCCGAGCGTGCTGTGTCTGTTCTCAGAGCATGGTTGTTTGAGCACTTTTTGCATCCTTATCCTACTGATACAGACAAGCTAATGTTGGCTAAACAAACTGGTCTATCTCGTAGCCAGGTGTCTAATTGGTTCATTAATGCAAGAGTAAGGCTCTGGAAACCAATGGTGGAAGAAATACATATGCTAGAAACACGGCAGGCTCAAAATTTAAAGAATTCACAGAAGGAAGAACATTGCAGGAACAAGTCAAGTGATCAATTACCTTCTGATAACTCCATTGTTTCTGAGAATCCATCTGGCTCAACAGAAAAGTTTCAGGGTCCTCCTTACAAGCGAGCTACAGACGAACTTACCAACATACCAGTTCGGACTCAGGAACAACTGAATCTTCCCTGCACAAGCAATCAGCCAGGGGGTGTTGAAGTGAGCATGGGTGGCAGTGCAAGCAATAGTGTGTCACTCACACTAGGACTTCATCAAAATCATGGCATTGGTTTGGCTGAACCTTTTAGCCTGAATGCAGCACAGCGATTTGGTGTTGCTCTTGAAACCAACAATGAAGGCTATGTGATGAGTGGATATGAGTCACAGAATAGGCATTTTGGAAGAGATGTCATTGGAGGACAACTGGTGCATGATTTTGTTGGCTGA 1833 0.4463 MAEGFEAYHVPQQSRRDKLRVVVTQNQHGLVEPSTLLPLYDPSSFISSDLLTSFHNSHKHNLGCGVKEERANLMMGFAGRGGEGGGVMNNGSSSSLCCSSNSSSVSYLDPESSLPLNQATIQVINNNNNMFLYQAQNLGEFDQGYNNNNGSEIMVFKPEPLSLSLSSNSNGVNLQRYGSVVCGDKVSGVGGGGGCVVYGGSGLNEASRCTVPMGPFTGYASILKGSRFLKPAQQLLEELCDVGGVCAEKMVADASLMEPVPLPPPENSSEDLLGDHGGDHGRKKSRLLTMLDEVYRRYRQYYQQMHAVVTSFEYVSGLRNAAPYASLAIKAMSKHFRCLKNAITDQLQFANKAHFHISNRKDESSRFGNSDRGPYSQRPGFLEHQPVWRPQRGLPERAVSVLRAWLFEHFLHPYPTDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQAQNLKNSQKEEHCRNKSSDQLPSDNSIVSENPSGSTEKFQGPPYKRATDELTNIPVRTQEQLNLPCTSNQPGGVEVSMGGSASNSVSLTLGLHQNHGIGLAEPFSLNAAQRFGVALETNNEGYVMSGYESQNRHFGRDVIGGQLVHDFVG 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01078 610 Pfam Associated with HOX 222 344 IPR006563 -
Vian9g01078 610 MobiDBLite consensus disorder prediction 479 498 - -
Vian9g01078 610 SMART HOX_1 388 452 IPR001356 GO:0003677
Vian9g01078 610 ProSiteProfiles 'Homeobox' domain profile. 385 448 IPR001356 GO:0003677
Vian9g01078 610 MobiDBLite consensus disorder prediction 360 381 - -
Vian9g01078 610 MobiDBLite consensus disorder prediction 464 478 - -
Vian9g01078 610 SUPERFAMILY Homeodomain-like 390 455 IPR009057 -
Vian9g01078 610 Gene3D - 391 453 - -
Vian9g01078 610 SMART prehox3 217 345 IPR006563 -
Vian9g01078 610 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 114 469 - -
Vian9g01078 610 FunFam BEL1-like homeodomain protein 9 391 453 - -
Vian9g01078 610 MobiDBLite consensus disorder prediction 461 506 - -
Vian9g01078 610 Pfam Homeobox KN domain 405 444 IPR008422 GO:0003677|GO:0006355
Vian9g01078 610 MobiDBLite consensus disorder prediction 261 281 - -
Vian9g01078 610 CDD homeodomain 388 449 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01078 Vian-Chr9 22159070 22163790 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01078 152 610 Homeobox Transcription Factor Family AT5G02030 50.928 2.61e-120 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vian9g01078 POX 1.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01078 - - gmx:100805512 1012.29