Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vian9g01058 | ATGGCAACCCATCTGAATCATGTGTTAAGAACTTCAATTCTGAAGCACAAAACACAATCAGAGACCCCTTTGAGAACCTCACGAAGAACCCCAAGATTTGAAGTGATCAATGCAACAACATCTTCCACCAGCAGTGCAAGGCAGCTCATAGAGTCTGGCACAGTGAGGCCTATATTGCCCAAAGATGCTTCCTCAGCAATAAACTCAGAGGGCTTTATTCTGCTTGATGTTAGGCCATATTGGGAGAGAGAGAAGGCACGTGTGACAGGGTCTTTGCACGTGCCAATCTTTGTCGAAGACAAGGATAACAGCCCTATAACTTTACTTAAGAAGTGGGTGCATTTTGGGTACATTGGGTTGTGGACTGGCCAGTACCTCACTACTGTGAATTCTGAGTTCCTTAGTCAAGTGGAAAAAGCCGTTCCTGGTAAGGACACAAAGCTTCTTGTGGCATGTGGAGAAGGATTGAGGTCAATGACAGCAGCTTCAAAACTGTGTAATGGAGGTTACAAAAATCTGGGATGGTTGGCTGGTGGATTTAATCGTTCAAAGGACAATGACTTCCCATCAGCAGAAGGAAAAGAGAAGTTGCAGTATGCTACAATTGGGGGAGTTTCTTACATATTCCTTCAGTTGCTCATATTTCTAAAGGCTGTGGGATAA | 663 | 0.4419 | MATHLNHVLRTSILKHKTQSETPLRTSRRTPRFEVINATTSSTSSARQLIESGTVRPILPKDASSAINSEGFILLDVRPYWEREKARVTGSLHVPIFVEDKDNSPITLLKKWVHFGYIGLWTGQYLTTVNSEFLSQVEKAVPGKDTKLLVACGEGLRSMTAASKLCNGGYKNLGWLAGGFNRSKDNDFPSAEGKEKLQYATIGGVSYIFLQLLIFLKAVG | 220 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vian9g01058 | 220 | SMART | rhod_4 | 58 | 189 | IPR001763 | - | |
| Vian9g01058 | 220 | PANTHER | RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 10 | 1 | 219 | IPR044614 | - | |
| Vian9g01058 | 220 | Pfam | Rhodanese-like domain | 60 | 182 | IPR001763 | - | |
| Vian9g01058 | 220 | ProSiteProfiles | Rhodanese domain profile. | 68 | 192 | IPR001763 | - | |
| Vian9g01058 | 220 | SUPERFAMILY | Rhodanese/Cell cycle control phosphatase | 49 | 193 | IPR036873 | - | |
| Vian9g01058 | 220 | CDD | RHOD | 62 | 181 | - | - | |
| Vian9g01058 | 220 | Gene3D | - | 55 | 201 | IPR036873 | - | |
| Vian9g01058 | 220 | FunFam | Rhodanese-like domain-containing protein 10 | 55 | 199 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vian9g01058 | Vian-Chr9 | 21647985 | 21648878 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vian9g01058 | 1 | 207 | Sulfurtransferasese or Rhodanese | AT3G08920 | 57.005 | 5.21e-81 | 239 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vian9g01058 | - | - | gmx:100795945 | 376.711 |