Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01056 ATGCAAATGGCTTCCACTCCCCGCACCGTCGAAGAGATCTTCAAGGATTACACCGCCCGAAGAACCGCCATCGTTCGCGCTCTCTCTCAAGATGTCGATGAATTCTACGGACTCTGTGATCCAGATAAGGAGAACCTGTGCCTCTATGGACATCCGAATGAGACTTGGGAGGTGACTTTGCCTGCGGAGGAAGTTCCGCCGGAGCTACCGGAGCCTGCTCTTGGAATCAATTTTGCAAGGGATGGCATGAACCGCAGGGACTGGCTTTCTCTGGTTGCCGTGCACAGTGATTCGTGGCTGCTTTCTGTGGCTTTTTATCTTGGAGCTCGTCTTAACCGCAATGAAAGGAAACGTTTGTTTGGCTTGATAAATGATCTTCCTACTGTTTTTGAAGTTGTGACTGAGAGGAAGCCGGTAAAGGACAAGCCCACAGCAGACAGTGGAAGCAAATCTAGGAGCAGCACCAAGAGATCAAGTGATGGGCAAGTTAAAAGCAACCCGAAGTTTGCAGATGAAGGATATGAAGAGGAGGATGACGAGCATAGTGAAACCCTGTGTGGGAGCTGTGGCGGAAATTACAATGCAGACGAATTTTGGATTGGTTGTGACATATGTGAGAGGTGGTTCCATGGGAAATGTGTGAAGATTACTCCTGCAAAAGCTGAGAGCATAAAGCAATACAAATGTCCATCATGCAGCTTGAGGCGGGGCAGGCCCTAA 720 0.4917 MQMASTPRTVEEIFKDYTARRTAIVRALSQDVDEFYGLCDPDKENLCLYGHPNETWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFGLINDLPTVFEVVTERKPVKDKPTADSGSKSRSSTKRSSDGQVKSNPKFADEGYEEEDDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCSLRRGRP 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01056 239 SUPERFAMILY FYVE/PHD zinc finger 174 237 IPR011011 -
Vian9g01056 239 CDD PHD_AL_plant 185 235 IPR044104 -
Vian9g01056 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 233 IPR013083 -
Vian9g01056 239 PANTHER CPG BINDING PROTEIN 6 238 IPR045104 GO:0006355|GO:0042393
Vian9g01056 239 SMART PHD_3 185 233 IPR001965 -
Vian9g01056 239 MobiDBLite consensus disorder prediction 137 177 - -
Vian9g01056 239 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Vian9g01056 239 ProSitePatterns Zinc finger PHD-type signature. 186 232 IPR019786 -
Vian9g01056 239 MobiDBLite consensus disorder prediction 148 165 - -
Vian9g01056 239 Pfam PHD-finger 186 233 IPR019787 -
Vian9g01056 239 ProSiteProfiles Zinc finger PHD-type profile. 183 235 IPR019787 -
Vian9g01056 239 FunFam PHD finger alfin-like protein 178 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01056 Vian-Chr9 21590413 21593258 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01056 4 238 Alfin-like Transcription Factor Family AT5G05610 77.542 1.64e-121 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Vian9g01056 Alfin 1.9e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01056 K26274 - gmx:100779170 466.077