Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01007 ATGGCTCCAAAAACTCTCTTTGGCCTCCTCATCTTTCTCTTTCTCCTTGTTTCTTCCACTGCTTTATCCTTCACATTCCATGGCTTCAATGAAAGCAATATCACCCGTGAAGAGAAAGCAAAGATTGACAACCAAGGTAGACTTGAGCTTACAAGAAGAGAAAACAATATTGTTGGCCATGCATTCTACAACGAATCCATCAAAATACTTGACAAAAATGCTTCAGTCCAGCCAAAGGTTTTCTCCTTCAGTACATGCTTTGTTTTCTCAATTGTGTCACCAAGCGCTGGTCCTGGTGGCTTTGGTCTTGCCTTCACAATAGCTCCTTCAACACGATTCCCACAAGCTGAAGGTGGCCATCTTCTTGGTCTTTTCAACTCCTTGAATGATATGAACTCCTCAAATCACATCTTAGTGGTTGAGTTTGATACAGTTAATGGCTACAAAGATGCCACTGACACTGTAGGAAACCATGTTGGGGTGAACAAAAATGGTATGTCCTCAAATATATCCGAGCCTGCTGCTTACTTTGTAGATGGCAAAAAGGAAGAGTTCAACATGGAGAAGGCTGACGCTGTTTGTGTTTGGATTGAATATGATGGTGAAACAGAAATACTGAATCTCACAGTATCCCCTTATTTGGAACCAAAACCAAACAAACCTCTTATATCTCAGGCTGTTCACATCAAATCTGTCATGAAGGAGAGCATGTTTTTTGGTTTCTCTGCATCAACAGGTAAGAGGAAGGCAAGTGCTCATTATATTCTGGGGTGGAGTTTTGCATTGAATGGGGTTGCCCCTCCATTAGATTATGCACTACTTCCAAAGCCACCACCAAAGGAGAAACACTCACAGTCTTTTCCTTGGATCAAGGTTATAATTGGCATGTTGTCTGCTTTGACATTTACCTTGTTGTGCCTTTTTCTTTATGTGACACTCTATAAGAGATACATGGTATTTGAAACTCTTGAGGACTGGGAAATGGATTGTCCTCACAGGTTCAGATACAGAGATCTTCACCTAGCAACAAAGGGGTTCGTAGAGAGCCAACTAATTGGAGTTGGAGGCTTTGGTTCTGTGTACAAAGGGGTGTTACCCAGAACAGGAACTGAGGTTGCTGTTAAAAGGATCCTGAGAACTCCAGCCAAAGGAATGAGGGAATTTGCAGCTGAGATTGAAAGCTTAGGAAGATTGAGGCACAAGAATTTGGTGAACCTTCAAGGGTGGTGCAAGCAAAAGAATGATCTCCTTTTGGTTTATGATTACATTCCAAATGGGAGCCTTGATTCTCTCCTATTCAGCAGAAGCTTTGTTTTGGATTGGAATCATAGATTCAGAATTCTCAAAGGTGTAGCTGCTGGGCTGTTGTATCTGCATGAAGAATGGGAGCAAGTGGTGATCCATAGAGATGTGAAATCTAGCAATATTCTTATTGATGGGGACTTTAATGCTCATTTAGGTGACTTTGGCCTAGCAAGGCTTTATAGCCACGATAAAGAGTCACACACAACAAGTGTGGTTGGAACCATAGGGTATATTGCACCAGAGTTAACTAGGACAGGAAAAGCATCTACAAGCTCTGATGTGTACGCATTTGGGGTCCTACTTCTTGAAGTGGTTGCAGGAACAAGACCTGTTGGTTCATCAGATCAGTTTTTCTTGGTGGATTGGGTTCTCGAAAATTTCCAACTGGGTCAGATTCTTGAAGTGGTTGATCCAAAGTTAGATTCAATTTATGAGGAAGAGGAAGTAGAATTGGTTCTGAAATTGGGTCTGCTATGCGCTCAAAACAAAGCTGAGTATAGACCTTCTATCGAACAAGTGACTAGGTACCTAAACTTTGATGACCCTTTTCCTGATATCTCTGATTGCAGATACTATGATTCTCAAAGTAGCACGACAAGCTTAGGGTTTTTAGAAGCCATGTCTACGGGTAAGACTTCATCCTCGTACAGTTTACCCTCCATTGACAGGAGTACAATGTCCATAGAAGCTGGCAGATAG 2004 0.4182 MAPKTLFGLLIFLFLLVSSTALSFTFHGFNESNITREEKAKIDNQGRLELTRRENNIVGHAFYNESIKILDKNASVQPKVFSFSTCFVFSIVSPSAGPGGFGLAFTIAPSTRFPQAEGGHLLGLFNSLNDMNSSNHILVVEFDTVNGYKDATDTVGNHVGVNKNGMSSNISEPAAYFVDGKKEEFNMEKADAVCVWIEYDGETEILNLTVSPYLEPKPNKPLISQAVHIKSVMKESMFFGFSASTGKRKASAHYILGWSFALNGVAPPLDYALLPKPPPKEKHSQSFPWIKVIIGMLSALTFTLLCLFLYVTLYKRYMVFETLEDWEMDCPHRFRYRDLHLATKGFVESQLIGVGGFGSVYKGVLPRTGTEVAVKRILRTPAKGMREFAAEIESLGRLRHKNLVNLQGWCKQKNDLLLVYDYIPNGSLDSLLFSRSFVLDWNHRFRILKGVAAGLLYLHEEWEQVVIHRDVKSSNILIDGDFNAHLGDFGLARLYSHDKESHTTSVVGTIGYIAPELTRTGKASTSSDVYAFGVLLLEVVAGTRPVGSSDQFFLVDWVLENFQLGQILEVVDPKLDSIYEEEEVELVLKLGLLCAQNKAEYRPSIEQVTRYLNFDDPFPDISDCRYYDSQSSTTSLGFLEAMSTGKTSSSYSLPSIDRSTMSIEAGR 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01007 667 SMART serkin_6 346 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g01007 667 FunFam L-type lectin-domain containing receptor kinase S.4 423 625 - -
Vian9g01007 667 Gene3D Transferase(Phosphotransferase) domain 1 423 623 - -
Vian9g01007 667 FunFam L-type lectin-domain containing receptor kinase V.9 21 265 - -
Vian9g01007 667 Pfam Legume lectin domain 22 270 IPR001220 GO:0030246
Vian9g01007 667 Gene3D Phosphorylase Kinase; domain 1 331 422 - -
Vian9g01007 667 ProSiteProfiles Protein kinase domain profile. 346 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g01007 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Vian9g01007 667 CDD lectin_legume_LecRK_Arcelin_ConA 22 264 IPR001220 GO:0030246
Vian9g01007 667 ProSitePatterns Protein kinases ATP-binding region signature. 352 383 IPR017441 GO:0005524
Vian9g01007 667 FunFam serine/threonine-protein kinase PBS1-like 318 422 - -
Vian9g01007 667 SUPERFAMILY Protein kinase-like (PK-like) 329 619 IPR011009 -
Vian9g01007 667 Pfam Protein kinase domain 347 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g01007 667 PANTHER - 20 614 - -
Vian9g01007 667 CDD STKc_IRAK 352 613 - -
Vian9g01007 667 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 279 IPR013320 -
Vian9g01007 667 Gene3D - 19 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01007 Vian-Chr9 20103028 20105031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01007 24 637 Receptor kinase-like Gene Family AT5G01560 51.905 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vian9g01007 Pkinase 2.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01007 - - vra:106770487 1273.84