Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00988 ATGCCATCTTCGTCGGTTCTTACATTCCTCTTCCAAAACGGCTGCGTTCCAATCACCATTCACTTTAAAACGAACATGACACATTCTCTGTTTCTCTTTCAATTTCTTGTTTTCATATTTCACGTTTTGTTCACTTTCATTCCAGCGCTTTCACTCTCCTCCGACGGCCTCGCGCTTCTCGCTCTGAAGTCCGCCATCGACCAGCCTTCCTCCGCTTTCTCCGACTGGAACGACGGCGACGTCACGCCCTGCGCCTGGTCGGGAATCGTTTGTGCCAACATATCTGGCGAGGAGGACCCCCGTGTGGTCGGAATCTCCCTCGCCGGGAAATCCATCTCCGGTTACCTCCCGTCAGAGCTTGGTACTCTGCGCTTCCTCCGCCGACTTAACCTCCACGACAACGCCTTCTCCGGCGTCCTACCGGCGCAGCTCTCCAACGCTACCGCACTCCACAGCCTCTTCCTCCACCGTAACAACCTCTCCGGCCCCATCCCCCACTCTCTCTGTAGCCTCCCGCGCCTCCAAAATCTCGACCTCTCCGAAAATGCATTCTCCGGTCATATTCCCGACCTCCTCGGAAACTGCAAGAATCTCCAGCGCCTTATCGTCGCCGGCAACAGGTTTTCGGGTGAGATTCCCGCCGGCGTGTGGCCGGAACTTCAGAACCTCCTCCAACTCGACCTCTCCGCGAATGAGTTAACCGGTTCAATCCCTGACGAAATTGGAACCCTAGTTTCCCTCTCTGGCACGCTGAATCTCTCCTTCAACCACCTATCCGGTAAGATTCCGGCGTCGCTGGGAAAATTACCGGCGACGGTGAGCTTCGATTTCAGAAACAACAACCTCAGCGGAGAAATTCCCCAAACGGGGTCGTTTTCAAACCAAGGTCCCACGGCGTTCCTTGGAAATCCTAACCTATGCGGGTTTCCTCTTAGAAAATCATGTTCCGGTTCGGACCGGGATTTTTCTCCCGGTTCGGATCAAAACAAACCGGTCCACCGGTCAAAGGGGTTAAGCCCCGGTTTAATTATTTTAATCTCCGCGGCTGATGCTGCTGTTGTGGCCTTCATTGGGCTTGTGATTGTTTATGTCTATTGGAAGAAAAAGGATGATGAGAATGCGTGTAGTTGCATTAGGAGAAGAAAGTTCGGCGAAGAGAAAGGGAGCGTGTGTTTCTGTGGTGGATTCCCATGTGTTAGTGGGGAGAAAAGTGATGATGATGATGATGATGATGAAGATTATGAGGTGGAGGCGGCTGAGGGTGAGGGTGAAGGGGAATTGGTGAGGATTGATAAGGGATTGAGTTTCGAACTTGATGAGCTGTTGAGGGCTTCTGCTTACGTGTTGGGGAAGAGTGGGTTGGGAATTGTGTATAAGGTGGTGTTGGGGAATGGGGTTCCTGTGGCTGTGAGGAGGCTGGGGGAGGGAGGGGAACAGAGGTACAAGGAGTTTGCTGCAGAGGTTATGGCCATTGGGAAGGTCAAGCACCCTAATGTTGTAAGGTTGAGGGCTTACTATTGGGCACATGATGAAAAGCTTCTCATCAGTGATTTCATCTCCAATGGCAATCTCACACATGCCCTTAGAGGGAGAAATGGCCAACCATCTACAAATCTTTCATGGTCCACCAGGCTGAAAATCGCAAAAGGAACAGCGAGGGGCTTGGCCTATCTCCACGAATGCAGCCCAAGAAAGTTCGTCCATGGTGACATTAAACCCTCCAACATCCTACTTGACAACGAATTCCAACCCTACATTTCTGATTTTGGCCTGAACCGTCTGATCAGCATTACCGGCAACAACCCCTCCACCGGCGGATTCATGGGTGGAGCTCTTCCTTACATGAAGTCTTCACAGAAAGAGAGAAGCGACAATTACAAAGCCCCTGAGGCTCGTGTCCCTGGGTGCAGACCCACCCAGAAATGGGACGTGTACTCATTTGGGGTTGTGTTGCTTGAAATACTAACTGGGAGGTCACCAGAATCATCTCCCACCACATCAACTTCCATGGAAGTCCCTGACTTGGTAAGGTGGGTGAGGAAAGGGTTCGATCAAGAAAGCCCGTTATCTGAGATGGTTGATCCATCGCTGCTCCAAGAAGTGCGTGTTAAGAAAGAGGTGCTGGCTGTGTTTCACGTAGCTTTGGCTTGCACTGAAGGAGACCCTGAGGCTCGGCCAAGGATGAAAACTGTCTCTGAAAATCTTGATAAGATTGGAACGTAA 2223 0.5142 MPSSSVLTFLFQNGCVPITIHFKTNMTHSLFLFQFLVFIFHVLFTFIPALSLSSDGLALLALKSAIDQPSSAFSDWNDGDVTPCAWSGIVCANISGEEDPRVVGISLAGKSISGYLPSELGTLRFLRRLNLHDNAFSGVLPAQLSNATALHSLFLHRNNLSGPIPHSLCSLPRLQNLDLSENAFSGHIPDLLGNCKNLQRLIVAGNRFSGEIPAGVWPELQNLLQLDLSANELTGSIPDEIGTLVSLSGTLNLSFNHLSGKIPASLGKLPATVSFDFRNNNLSGEIPQTGSFSNQGPTAFLGNPNLCGFPLRKSCSGSDRDFSPGSDQNKPVHRSKGLSPGLIILISAADAAVVAFIGLVIVYVYWKKKDDENACSCIRRRKFGEEKGSVCFCGGFPCVSGEKSDDDDDDDEDYEVEAAEGEGEGELVRIDKGLSFELDELLRASAYVLGKSGLGIVYKVVLGNGVPVAVRRLGEGGEQRYKEFAAEVMAIGKVKHPNVVRLRAYYWAHDEKLLISDFISNGNLTHALRGRNGQPSTNLSWSTRLKIAKGTARGLAYLHECSPRKFVHGDIKPSNILLDNEFQPYISDFGLNRLISITGNNPSTGGFMGGALPYMKSSQKERSDNYKAPEARVPGCRPTQKWDVYSFGVVLLEILTGRSPESSPTTSTSMEVPDLVRWVRKGFDQESPLSEMVDPSLLQEVRVKKEVLAVFHVALACTEGDPEARPRMKTVSENLDKIGT 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00988 740 Pfam Leucine rich repeat 126 183 IPR001611 GO:0005515
Vian9g00988 740 Gene3D Ribonuclease Inhibitor 52 216 IPR032675 -
Vian9g00988 740 Gene3D Ribonuclease Inhibitor 217 317 IPR032675 -
Vian9g00988 740 SMART LRR_typ_2 123 146 IPR003591 -
Vian9g00988 740 SMART LRR_typ_2 171 195 IPR003591 -
Vian9g00988 740 SMART LRR_typ_2 220 244 IPR003591 -
Vian9g00988 740 FunFam Os07g0541700 protein 521 609 - -
Vian9g00988 740 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 52 217 - -
Vian9g00988 740 ProSitePatterns Serine/Threonine protein kinases active-site signature. 566 578 IPR008271 GO:0004672|GO:0006468
Vian9g00988 740 ProSiteProfiles Protein kinase domain profile. 443 738 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g00988 740 SUPERFAMILY Protein kinase-like (PK-like) 448 734 IPR011009 -
Vian9g00988 740 CDD STKc_IRAK 449 738 - -
Vian9g00988 740 Pfam Protein kinase domain 448 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g00988 740 FunFam Leucine-rich repeat receptor-like protein kinase 426 518 - -
Vian9g00988 740 Pfam Leucine rich repeat N-terminal domain 53 91 IPR013210 -
Vian9g00988 740 Gene3D Phosphorylase Kinase; domain 1 435 518 - -
Vian9g00988 740 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 192 738 IPR046959 -
Vian9g00988 740 FunFam Leucine-rich repeat receptor-like protein kinase 222 317 - -
Vian9g00988 740 SUPERFAMILY L domain-like 53 312 - -
Vian9g00988 740 SMART serkin_6 447 738 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g00988 740 Gene3D Transferase(Phosphotransferase) domain 1 519 740 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00988 Vian-Chr9 19544185 19547938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00988 48 738 Receptor kinase-like Gene Family AT1G67510 68.539 0.0 946
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vian9g00988 Pkinase 3.2e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00988 - - var:108346287 1443.33