Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00975 ATGGGACACAACAGTTGTCATGCCAAAGATTTCTTCACAGACCCTTTTCAGGTTAACCTCTCTTTTGCTTCATATGGTCATAGGAGGAGGAACCACAAAGGTGTTGGGGGTGGTGGTTTTATTTGCTTAGCTTCTTTTGTGTTTCTTTTGCAAGCTTTGGCTTCTGTCATTCAGCCTGTTTCAGGGCAGTTGTGGGATGGGGTGGTTGTTACTCAGGCTGATTTTCAAGCCCTGAGGGCTATTAAGAATGAGCTAATTGACTTCAAAGGGGTTCTCAAGAGCTGGAATGACAGTGGTCTAGGTGCTTGTTCTGGGTGGGCAGGAATCAAGTGTGTGAATGGTGAGGTTATTGCAATTCAGCTTCCTTGGAGAGGGTTAGGTGGCAGGATCTCTGAGAAAATTGGCCAACTTCAGTCTCTTAGGAAGCTCAGTCTTCATGACAATGTTCTTGCTGGTCCAGTTCCTTTGTCACTTGGCCTCCTTCCCAACCTTAGAGGGGTTTATCTCTTCAATAACAAGCTTTCAGGTTCTATCCCTCCTTCCCTTGGCAATTGTCCAATGCTTCAGTCTCTTGATATTAGCAACAATTCCCTCAGTGGTAAAATCCCTCCCAGTTTAGCGAGATCTACTAGGATGCTTCGGATCAATTTGAGCTTCAACTCACTTTCTGGATCCATTCCTAGCAGTTTAACCATGTCTCCTTCTCTAACCATTCTTGCCCTTCAACACAACAACCTCTCTGGCTCTATCCCAGATTCTTGGGGTGGAGCTGGAAAGAAGAAAGCTTCCCAGCTTCAGGTTTTGACCCTTGATCACAATCTCATTTCTGGAATCATCCCAGTTTCTCTAGGCAAGCTAGCTTTACTTGAAAATGTTTCTTTGAGTCATAACCTGATTGTAGGGCCTATTCCAAGTGAACTAGGTGCACTTTCTAGGCTTCAAATTCTTGATCTTTCAAACAATGCCATCAATGGCAGCATTCCTGCTAGCTTCTCTAATCTCTCTTCTCTAGTTTCATTGAACCTAAATAGCAATCAACTTGCAAACCATATTCCCGATTCTTTGGACAGTTTGCACAACCTTTCTGTGCTTAACCTGAAGAACAATAAGCTTGATGGCAAAATCCCACCAACAATAGGGAACATCTCAAGCATTAGCCAAATTGATTTCTCTGAGAACAAATTAGTTGGAGGAATCCCAGATTCCTTTACTAAACTTGCGCATCTCAGTTCATTCAACGTCTCTTACAACAACCTATCTGGTCCTGTCCCATCTCTACTTTCCAAAAGATTCAATGCTAGCTCTTTCGTAGGGAATCTTGAGCTATGTGGGTATATCAGTTCAAAACCATGCTCTTCACCCCCTCCTCATAATCTTCCAGCTCAATCACCACAATCTCTTTCTAAGCCTCACCACCGAAAACTAAGCACCAAGGACATAATCCTCATAGTAGCAGGTGTTCTTCTGTTGATTCTGTTATTACTGTGCTGCTTTTTGTTGTGTTGTTTGATCAGGCGAAGAACTGCTTCAAGCAGAAAGAGTGGCAAAGCTGCTAAGGCTGCAGCATCTGCTAGGAGTCTTGAGAAAGGTGCTTCAGCTGGTGGTGAGGTTGAAGCAGGAGGTGAAGCTGGTGGGAAACTAGTTCACTTTGATGGGCCTTTTGTGTTTACTGCTGATGATCTTTTGTGTGCAACTGCGGAGATAATGGGAAAAAGTGCATATGGAACAGCATACAAAGCAACATTGGAAGATGGTAACCAAGTTGCTGTGAAGAGGTTGAGGGAAAAAACTACTAAAGGGCAGAAGGAGTTTGAAACTGAGGTTGCTGCACTTGGCAAAATCAGACACCCAAATCTCTTAGCACTTAGAGCCTACTATTTAGGACCAAAAGGAGAGAAGCTTCTTGTCTTTGATTACATGACAAAAGGAAGTCTAGCATCATTCCTTCATGCTCGTGGGCCTGAAATTGTTATTGAATGGCCAACAAGGATGAAGATAATGATTGGAGTGACTAGGGGCTTGAGCTACCTCCATAGCCAAGAGAACATTGTTCATGGGAACCTCACATCAAGCAATATACTATTGGATGAGCAAACAGAAGCCCACATAACAGATTTTGGTCTCTCAAGGCTGATGACAACTTCTGCCAACACCAACATCATTGCCACTGCAGGAAGCCTTGGCTACAACGCACCAGAGCTTTCAAAGACCAAGAAGCCTAACACAAAGACTGATGTGTACAGTCTTGGTGTTATCATGTTGGAACTCCTAACTGGAAAGCCACCTGGGGAGCCAACCAATGGCATGGACTTACCCCAATGGGTTGCCTCCATAGTGAAGGAAGAGTGGACTAATGAAGTGTTTGATTTGGAACTCATGAGGGATGCACCAGCCATAGGGGATGAACTGCTTAACACATTGAAATTAGCACTGCATTGTGTTGATCCATCTCCTGCTGCTAGGCCTGAAGTACACCTAGTTCTGCAGCAACTGGAGGAGATCAAACCAGACTTGGCTGCAGGAGATGATGGAGCTACCAAGGTTCAAACAACTGAGTAA 2559 0.4412 MGHNSCHAKDFFTDPFQVNLSFASYGHRRRNHKGVGGGGFICLASFVFLLQALASVIQPVSGQLWDGVVVTQADFQALRAIKNELIDFKGVLKSWNDSGLGACSGWAGIKCVNGEVIAIQLPWRGLGGRISEKIGQLQSLRKLSLHDNVLAGPVPLSLGLLPNLRGVYLFNNKLSGSIPPSLGNCPMLQSLDISNNSLSGKIPPSLARSTRMLRINLSFNSLSGSIPSSLTMSPSLTILALQHNNLSGSIPDSWGGAGKKKASQLQVLTLDHNLISGIIPVSLGKLALLENVSLSHNLIVGPIPSELGALSRLQILDLSNNAINGSIPASFSNLSSLVSLNLNSNQLANHIPDSLDSLHNLSVLNLKNNKLDGKIPPTIGNISSISQIDFSENKLVGGIPDSFTKLAHLSSFNVSYNNLSGPVPSLLSKRFNASSFVGNLELCGYISSKPCSSPPPHNLPAQSPQSLSKPHHRKLSTKDIILIVAGVLLLILLLLCCFLLCCLIRRRTASSRKSGKAAKAAASARSLEKGASAGGEVEAGGEAGGKLVHFDGPFVFTADDLLCATAEIMGKSAYGTAYKATLEDGNQVAVKRLREKTTKGQKEFETEVAALGKIRHPNLLALRAYYLGPKGEKLLVFDYMTKGSLASFLHARGPEIVIEWPTRMKIMIGVTRGLSYLHSQENIVHGNLTSSNILLDEQTEAHITDFGLSRLMTTSANTNIIATAGSLGYNAPELSKTKKPNTKTDVYSLGVIMLELLTGKPPGEPTNGMDLPQWVASIVKEEWTNEVFDLELMRDAPAIGDELLNTLKLALHCVDPSPAARPEVHLVLQQLEEIKPDLAAGDDGATKVQTTE 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00975 852 Pfam Leucine rich repeat N-terminal domain 73 111 IPR013210 -
Vian9g00975 852 Gene3D Transferase(Phosphotransferase) domain 1 641 846 - -
Vian9g00975 852 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 259 454 - -
Vian9g00975 852 PRINTS Leucine-rich repeat signature 310 323 - -
Vian9g00975 852 PRINTS Leucine-rich repeat signature 188 201 - -
Vian9g00975 852 Pfam Leucine rich repeat 311 371 IPR001611 GO:0005515
Vian9g00975 852 ProSiteProfiles Protein kinase domain profile. 563 838 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g00975 852 Pfam Protein tyrosine and serine/threonine kinase 567 831 IPR001245 GO:0004672|GO:0006468
Vian9g00975 852 Gene3D Phosphorylase Kinase; domain 1 569 640 - -
Vian9g00975 852 Pfam Leucine Rich Repeat 188 206 IPR001611 GO:0005515
Vian9g00975 852 CDD STKc_IRAK 569 834 - -
Vian9g00975 852 FunFam Pollen receptor-like kinase 1 640 844 - -
Vian9g00975 852 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 263 834 - -
Vian9g00975 852 SMART LRR_typ_2 161 185 IPR003591 -
Vian9g00975 852 SMART LRR_typ_2 406 429 IPR003591 -
Vian9g00975 852 SMART LRR_typ_2 334 357 IPR003591 -
Vian9g00975 852 SMART LRR_typ_2 310 333 IPR003591 -
Vian9g00975 852 SMART LRR_typ_2 358 382 IPR003591 -
Vian9g00975 852 SUPERFAMILY Protein kinase-like (PK-like) 567 836 IPR011009 -
Vian9g00975 852 FunFam Leucine-rich repeat receptor-like kinase 73 183 - -
Vian9g00975 852 Gene3D Ribonuclease Inhibitor 187 259 IPR032675 -
Vian9g00975 852 Gene3D Ribonuclease Inhibitor 73 186 IPR032675 -
Vian9g00975 852 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 184 258 - -
Vian9g00975 852 Gene3D Ribonuclease Inhibitor 260 451 IPR032675 -
Vian9g00975 852 SUPERFAMILY L domain-like 110 452 - -
Vian9g00975 852 FunFam Leucine-rich repeat receptor-like protein kinase 549 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00975 Vian-Chr9 19126612 19129505 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00975 65 836 Receptor kinase-like Gene Family AT3G51740 70.437 0.0 1043
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vian9g00975 PK_Tyr_Ser-Thr 2.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00975 - - gmx:100799290 1394.41