Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00958 ATGGGATCAATGCCCGGTGAAGACACGGGTGGATGCGGTGGAGTTGTTCGGAGGAGGAAAGTTAGTCCATTTTTTGTGAGTTTTGTGTCATATGATTCTTCTATTCTTGAAATGCAATATGCAGAGATTGATGAGAATTATGAGATTTTGGAAGCTATGCCACCCTTAGTGGTTGGAGCAAGGGTTGAAGGGGAGGTCGTTGCAGAAACAGCCAATGTTGAGAGTACTGAAAGGAAGATCCAGCGTCGTGTTTCAGTACATGATGTGGAATGTTCATGCAACCATAACCATGATGATGGTGCATGTGAACATGGTGGGGACCGTATCATGTCAAGAGGGTCCTCTGGATTTGTATCAATGTACAGCAAAAAGGGTTCAAAAGGAGTTAATCAAGATGCATTGACTGTGTGGAAGGACTTCACTGCAAAGAAGGACATGATCTTTTGTGGGGTGTTTGATGGTCATGGTCCTCTGGGGCACAAGTTTTCACAGTCTATACGTGACAAACTACCCTCAAAACTCTCTGCATCAATCAAACAGTCACAACAAAAGGTCATCAAACACAATGATACTAATGCTACAGATGGAAGTAGTCATAGTAAAGTAAATATGTCCTTTTCTTCATGGGAGGGAAGCTTTATGAAGTGCTTCACTGAAATGGATGAATACCTTGCTAAGAACATAGACTCTAAAGGGTTTTCTGGAGGTAGCACTGCTGTAACTGTTATCAAACAGGGTGACCAATTAATAATTGGAAATTTGGGGGATTCACGTGCAGTTCTTTGCAGAAGAACAGATGACAACCATCTTGTTCCTGTTCAACTTACTGTTGACTTGACCCCAGATATTCCAAGTGAAGCTTTAAGAATCATTAATTGCGGAGGTAAAATATTTTCTGTAAATGAAGAACCAAGAGTAAATAGAATATGGAGGCCAAATGGGAGTCGCCCTGGACTGGCTATGGCAAGAGCCTTCGGAAATTTTTGCCTAAAAGATTATGGTCTCATCTCAGTCCCTGATGTATCATACAGAAAACTTACAGAGCAGGATGAGTTTGTGGTTCTGGCTTCTGATGGGGTATGGGATGTGCTAACAAACAGTGAAGTAATAGACATAGTTGCTTCAGCACCAAAAAGGTCCATGGCAGCTAAATTGTTAGTGGACCATGCAGTTAAAGCATGGAAACGTAAGTATGTTTCCATGGTTGATGATTGTACAGCCATATGCTTGTTCCTGAAGGATCAAACTGTTTTAACCCAATCCTGA 1266 0.4163 MGSMPGEDTGGCGGVVRRRKVSPFFVSFVSYDSSILEMQYAEIDENYEILEAMPPLVVGARVEGEVVAETANVESTERKIQRRVSVHDVECSCNHNHDDGACEHGGDRIMSRGSSGFVSMYSKKGSKGVNQDALTVWKDFTAKKDMIFCGVFDGHGPLGHKFSQSIRDKLPSKLSASIKQSQQKVIKHNDTNATDGSSHSKVNMSFSSWEGSFMKCFTEMDEYLAKNIDSKGFSGGSTAVTVIKQGDQLIIGNLGDSRAVLCRRTDDNHLVPVQLTVDLTPDIPSEALRIINCGGKIFSVNEEPRVNRIWRPNGSRPGLAMARAFGNFCLKDYGLISVPDVSYRKLTEQDEFVVLASDGVWDVLTNSEVIDIVASAPKRSMAAKLLVDHAVKAWKRKYVSMVDDCTAICLFLKDQTVLTQS 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00958 421 CDD PP2Cc 117 412 IPR001932 -
Vian9g00958 421 ProSiteProfiles PPM-type phosphatase domain profile. 117 412 IPR001932 -
Vian9g00958 421 ProSiteProfiles Zinc finger SWIM-type profile. 82 113 IPR007527 GO:0008270
Vian9g00958 421 PANTHER PROTEIN PHOSPHATASE 101 410 IPR015655 GO:0004722|GO:0006470
Vian9g00958 421 SUPERFAMILY PP2C-like 115 414 IPR036457 -
Vian9g00958 421 Pfam Protein phosphatase 2C 145 392 IPR001932 -
Vian9g00958 421 SMART PP2C_4 111 410 IPR001932 -
Vian9g00958 421 Gene3D - 111 415 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00958 Vian-Chr9 18575280 18585440 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00958 108 414 PP2C-type Phosphatase Gene Family AT1G16220 48.457 2.36e-110 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00958 - - vra:106755106 646.736