Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00954 ATGGGAGGGTGTTGCAGTCGTGTTTCAGTACATGATGTGGAATGTTCATGCAACCATAACCATGATGATGGTGCATGTGAACACGGTGGGGACCGTATCATGTCAAGAGGGTCCTCTGAGTTTGTATCAATGTACAGCAAAAAGGGTTCAAAAGGAGTTAATCAAGATGCATTGACTGTGTGGAAGGACTTCACTGCAAAGAAGGACATGATCTTTTGTGGGGTGTTTGATGGTCATGGTCCTCTGGGGCACAAGTTTTCACAGTCTATACGTGACAAACTACCCTCAAAACTCTCTGCATCAATCAAACAGTCACAACAAAAGGTCATCAAACACAATGATACTAATGCTACAGATGGAAGTAGTCATAGTAAAGTAAATATGTCCTTTTCTTCATGGGAGGGAAGCTTTATGAAGTGCTTCACTGAAATGGATGAATACCTTGCTAAGAACATAGACTCTAAAGGGTTTTCTGGAGGTAGCACTGCTGTAACTGTTATCAAACAGGGTGACCAATTAATAATTGGAAATTTGGGGGATTCACGTGCAGTTCTTTGCAGAAGAACAGATGACAACCATCTTGTTCCTGTTCAACTTACTGTTGACTTGACCCCAGATATTCCAAGTGAAGCTTTAAGAATCATTAATTGCGGAGGTAAAATATTTTCTGTAAATGAAGAACCAAGAGTAAATAGAATATGGAGGCCAAATGGGAGTCTCCCTGGACTGGCCATGGCAAGAGCCTTCGGAAATTTTTGCCTAAAAGATTATGGTCTCATCTCAGTCCCTGATGTATCATACAGAAAACTTACAGAGCAGGATGAGTTTGTGGTTCTGGCTTCTGATGGGGTATGGGATGTGCTAACAAACAGTGAAGTAATAGACATAGTTGCTTCAGCACCAAAAGGTCCATGGCAGCTAAATTGTTAG 930 0.414 MGGCCSRVSVHDVECSCNHNHDDGACEHGGDRIMSRGSSEFVSMYSKKGSKGVNQDALTVWKDFTAKKDMIFCGVFDGHGPLGHKFSQSIRDKLPSKLSASIKQSQQKVIKHNDTNATDGSSHSKVNMSFSSWEGSFMKCFTEMDEYLAKNIDSKGFSGGSTAVTVIKQGDQLIIGNLGDSRAVLCRRTDDNHLVPVQLTVDLTPDIPSEALRIINCGGKIFSVNEEPRVNRIWRPNGSLPGLAMARAFGNFCLKDYGLISVPDVSYRKLTEQDEFVVLASDGVWDVLTNSEVIDIVASAPKGPWQLNC 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00954 309 CDD PP2Cc 41 299 IPR001932 -
Vian9g00954 309 Gene3D - 34 307 IPR036457 -
Vian9g00954 309 ProSiteProfiles Zinc finger SWIM-type profile. 6 37 IPR007527 GO:0008270
Vian9g00954 309 Pfam Protein phosphatase 2C 68 299 IPR001932 -
Vian9g00954 309 SMART PP2C_4 31 300 IPR001932 -
Vian9g00954 309 SUPERFAMILY PP2C-like 39 299 IPR036457 -
Vian9g00954 309 ProSiteProfiles PPM-type phosphatase domain profile. 41 309 IPR001932 -
Vian9g00954 309 PANTHER PROTEIN PHOSPHATASE 39 301 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00954 Vian-Chr9 18431762 18433360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00954 32 301 PP2C-type Phosphatase Gene Family AT1G16220 48.252 2.89e-96 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00954 - - vra:106755106 574.704