Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00952 ATGTCTTTCAGTTTCACTGACCTACTTTCTAACAGCAATAGCTTAACCCTGGATGATGATCCTTTTGGACTTGAATTTGCTAACACTTTCAAACAACTTCAACCTCTCCCTTCTTATTCTGAGTTCCCACCTGGTTTTGCTCCAACAACACAGTCATTGAACTCACCCCTCTTGTTTTCTTCTCAAAATGTTCCTGCATCTTACTCAACTGAGTCATCTTCCAGCATGAACTTCAACATGAGAAACAGTTCAACTGTGGACCAGCTAGGAAACAATGAGGAAGAGAGAAACTACTCTGACTTCTCTTTCCTAACAAAAGCAAACCACGTGCCTCTCTTTCAATCTTCTACAAGCATGTTTCAAGTGGAGCCACTAAAGAAACAGGACACAATGATATTCAATGAAGCTGCAAAGCGAACAGATTTCTCATCTGAGAGGACAGAAACAAAATCTGAATATCCAACAACTCAGGGCTTCTCCACAGAAGTTGTCTCAATCAAACCTGAAATACAAAGCAATTCTACTTCTGGTTCTGTTCAGTTTAACTCCAATAATGCTTTTAAGTGCATTAGAGAACAAAGGAGATCAGAAGATGGGTACAATTGGAGGAAATATGGAGAGAAACAAGTGAAAGGAAGTGAGAATCCACGCAGTTATTACAAGTGCACTTATCCAAATTGTCCAACAAAGAAGAAAGTTGAGAGATCTTTGGAGGGACATGTTACTGAAATAGTATACAGGGGAAGTCACAATCATCCTAAGCCACATAATAGAAAAAATGGCTCTCAATCAATGCATCAAACTTCTTCATCCTGCACCATCTCTGGGATTTCAGATCAGTCTATGGGAGAGGAAGACTTTGAGCAAACATCACAAACTAGTTGCTCTGGAGGTGTTGATGATGATGACTTTGGTCATGAGGCCAAAAGATGGAAAGGAGAGAATGAAAATGATGACTATTCTAATTCCTCAGCTGGAAGTAGAACTGTTAAGGAACCTAGAGTTGTGGTTCAAACCACAAGTGAAATTGACATACTTGATGATGGATATAGGTGGAGGAAATATGGACAGAAAGTGGTCAAAGGAAACCCAAACCCAAGGAGTTACTACAAATGCGTTGCCCCAGGTTGTCCAGTGAGAAAACATGTTGAGAGAGCTGCAAATGACATGAAAGCTGTGCTAACAACCTATGAAGGGAAACATAACCATGATGTTCCTTTAGGACGAGGAAATGCAAGCTATAACAGAGCTTCTCTAAACAACAACACAAGCAATGTAACAGCACCTGCCCCAATAAGGCCTTCAGCAGTGAATAATTATTCTAACTCAGCAAATTTCATCAATTCACTCCCAGACACAAAGCTCTCAGCATCTGCAAGTCAAGAAGCTGTTCCGATGGACATGTTGCTGAGCCCTGGAAGCCTAGGATTTTCTTTGTATCTTGATATGATAACTGATACTGCTATACACCAGAAGGCAAAACAGGAGAAGGCAATGGCTACAGCTGAAGAGTTTGTAAATATGTTGTCAGCAGTTTCCCTCATTCTATTTGTTATTAGCGAAAGATGTTGA 1572 0.4033 MSFSFTDLLSNSNSLTLDDDPFGLEFANTFKQLQPLPSYSEFPPGFAPTTQSLNSPLLFSSQNVPASYSTESSSSMNFNMRNSSTVDQLGNNEEERNYSDFSFLTKANHVPLFQSSTSMFQVEPLKKQDTMIFNEAAKRTDFSSERTETKSEYPTTQGFSTEVVSIKPEIQSNSTSGSVQFNSNNAFKCIREQRRSEDGYNWRKYGEKQVKGSENPRSYYKCTYPNCPTKKKVERSLEGHVTEIVYRGSHNHPKPHNRKNGSQSMHQTSSSCTISGISDQSMGEEDFEQTSQTSCSGGVDDDDFGHEAKRWKGENENDDYSNSSAGSRTVKEPRVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCVAPGCPVRKHVERAANDMKAVLTTYEGKHNHDVPLGRGNASYNRASLNNNTSNVTAPAPIRPSAVNNYSNSANFINSLPDTKLSASASQEAVPMDMLLSPGSLGFSLYLDMITDTAIHQKAKQEKAMATAEEFVNMLSAVSLILFVISERC 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00952 523 MobiDBLite consensus disorder prediction 300 317 - -
Vian9g00952 523 SUPERFAMILY WRKY DNA-binding domain 338 406 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian9g00952 523 MobiDBLite consensus disorder prediction 318 333 - -
Vian9g00952 523 Pfam WRKY DNA -binding domain 347 403 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian9g00952 523 Pfam WRKY DNA -binding domain 197 253 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian9g00952 523 Gene3D WRKY domain 331 407 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian9g00952 523 Gene3D WRKY domain 181 256 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian9g00952 523 SUPERFAMILY WRKY DNA-binding domain 191 255 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian9g00952 523 SMART WRKY_cls 196 254 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian9g00952 523 SMART WRKY_cls 346 405 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian9g00952 523 MobiDBLite consensus disorder prediction 260 298 - -
Vian9g00952 523 FunFam WRKY transcription factor 33 333 399 - -
Vian9g00952 523 FunFam WRKY transcription factor 183 256 - -
Vian9g00952 523 MobiDBLite consensus disorder prediction 245 333 - -
Vian9g00952 523 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 109 426 IPR044810 GO:0003700
Vian9g00952 523 ProSiteProfiles WRKY domain profile. 341 406 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian9g00952 523 ProSiteProfiles WRKY domain profile. 191 255 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00952 Vian-Chr9 18379858 18384159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00952 191 442 WRKY Transcription Factor Family AT2G38470 58.042 8.64e-105 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vian9g00952 WRKY 1e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00952 K13424 - gmx:100127367 773.467