Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00900 ATGTACAAGGGTAGATTAGGAGGAAAAGCTCATCTTGGATATGTTGAAACTGACCCTTCTGGTCGATATGGTCGTTTCAGGGACATTCTTGGCAAAGGAGCAGTGAAGGTTGTGTATAGGGCATTTGATGAAGTCCTTGGAATAGAGGTTGCTTGGAACCAAGTTAACCTTGGTGATGTCTTTCATTCACCAGACCTACTTCAACGTCTTTACTCAGAGGTTCATCTCCTCAAGAACTTGGAACATGACTCCATCATGACCTTCCATGATTCTTGGATTGATGTCAATTATAGAACCTTCAACTTCATCACTGAATTGTTCACCTCTGGCACCCTAAGAGAGTACAGAAAGAAGTATCAGAGAGTAGATATCAGAGCAGTGAAGAACTGGGCACGCCAGATTCTAACTGGTTTGGAGTATTTGCATAGCCATGATCCTCCAGTGATACATAGAGACCTCAAGTGTGACAATATCTTTATCAATGGCCATCTGGGGCAGGTCAAAATTGGTGATTTGGGCCTTGCAGCCATTCTTCGTGGCTCCCAACATGCACACAGTACACCAGAATTTATGGCACCAGAATTGTATGAAGAGGAATACAACGAGCTGGTTGACATATACTCCTTTGGGATGTGTATGATAGAAATGTTTACTTCTGAGTTCCCATACAGCGAGTGCTCCAACCCAGCTCAAATATACAAGAAAGTTACTTCAGGGAAGCTGCCAGAAGCCTTTTACAGAATCCATGACTTGGAAGCTCAGAAGTTTGTGGGAAAATGTTTGGCAAATGTCTCAGAGAGGTTGTCAGCAAAGGAGCTGTTGTTGGACTCATTTTTAGCCGAGAACCAACTAGACTCTCCACTCTCTAGCCCAACATTACCCAGAAAACAAACCCCCACACTCAATTTCACTGCACCACTGGCCAAAGGGCTACCACCAATGAGCGACCAAATAAAAGACACACACATGACCATCACAGGATCAATCAATGAAGAGGATGACACAATTTTCCTTAAAGTAAAAATTTCTAACAAAAGTGGGGAAAAGAGGAATATATTCTTTCCATTTGACACCATAAACGACACTGCAATTGATGTGGCAGTGGAGATGGTTAAAGAACTTGAAATTAGTGACTTGGAACCATTAGAGATTGCTGAAATGATTGAGGAAGAGATATCAGCTTTAGTCCCAACATGGAGGGACTGGGGCACTTCTAAGTATCAAAGACAACATAGTTTTAGCTATGAAGATGAGTATGATATGAGTAACCACCACTCATACTTCTCACCATCTTCTCGCTCTTCCTCTCATGGTTCTTCCCACAAGCATAATTCCCACCTCTGTGGGAACCATTACCCTTTTGCTCATGATTGGCCTCAGGATGAACTGTTTATGAATGATGATTCGAGCTCTCAAAGCTCAATGAACTCCTTCAAGTGCTTCAATCTCAAGTACTGTGACCCTGGCAATGAAGATGGGCATGATCCAACTGCAGTACTAGGAGCAGAAGCCCTTTGCTACTCTCCAAAAGGCAACGAAAAGTGCACAAGATTCTGTCCTCGAGAAGAAGTGATGGATGCTGATTGCACCAAACAGTTTTGCAACATGAAAATGGATTCTCACAGGTATCATGGAGTCCAGAGGCTAACCAGGATTCGTTCCTTTGTGGATCTAAGGAGACAACAACTGCAACGATCACTGATGGAAGAGATTCACAAGAGGAGAATCTTCAAGACGGTTGGTGCCATTGAAAACATTGGTTTTCAAAATCCAGAGGGAGCTGCGAGTTTTTTATTTTAA 1800 0.4278 MYKGRLGGKAHLGYVETDPSGRYGRFRDILGKGAVKVVYRAFDEVLGIEVAWNQVNLGDVFHSPDLLQRLYSEVHLLKNLEHDSIMTFHDSWIDVNYRTFNFITELFTSGTLREYRKKYQRVDIRAVKNWARQILTGLEYLHSHDPPVIHRDLKCDNIFINGHLGQVKIGDLGLAAILRGSQHAHSTPEFMAPELYEEEYNELVDIYSFGMCMIEMFTSEFPYSECSNPAQIYKKVTSGKLPEAFYRIHDLEAQKFVGKCLANVSERLSAKELLLDSFLAENQLDSPLSSPTLPRKQTPTLNFTAPLAKGLPPMSDQIKDTHMTITGSINEEDDTIFLKVKISNKSGEKRNIFFPFDTINDTAIDVAVEMVKELEISDLEPLEIAEMIEEEISALVPTWRDWGTSKYQRQHSFSYEDEYDMSNHHSYFSPSSRSSSHGSSHKHNSHLCGNHYPFAHDWPQDELFMNDDSSSQSSMNSFKCFNLKYCDPGNEDGHDPTAVLGAEALCYSPKGNEKCTRFCPREEVMDADCTKQFCNMKMDSHRYHGVQRLTRIRSFVDLRRQQLQRSLMEEIHKRRIFKTVGAIENIGFQNPEGAASFLF 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00900 599 SMART serkin_6 24 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g00900 599 Gene3D Phosphorylase Kinase; domain 1 9 105 - -
Vian9g00900 599 FunFam Probable serine/threonine-protein kinase WNK1 9 105 - -
Vian9g00900 599 Gene3D - 335 401 - -
Vian9g00900 599 SUPERFAMILY Protein kinase-like (PK-like) 26 280 IPR011009 -
Vian9g00900 599 Pfam Protein kinase domain 28 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g00900 599 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Vian9g00900 599 Gene3D Transferase(Phosphotransferase) domain 1 107 285 - -
Vian9g00900 599 FunFam probable serine/threonine-protein kinase WNK9 107 284 - -
Vian9g00900 599 ProSiteProfiles Protein kinase domain profile. 24 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g00900 599 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 14 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00900 Vian-Chr9 16081625 16085640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00900 12 575 MAP Kinase Kinase Kinase AT3G51630 55.166 0.0 569
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vian9g00900 Pkinase 1.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00900 K08867 - gmx:100816187 1038.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00824 2 12271324 12274259 Vian9g00900 9 16081625 16085640 PCT