Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00898 ATGAGTTGCAGAGAAAGGAACAAAGGGGAAAGAGAAGAGAAGGAATATGAAAATAGTTCTGTTGCATTGAAATCAAAATCAGCGAGGCAAAACATTGGTTCAATAGAAGATGAACCGCTAACAATTGATGAAAGTCTTCTGATTGACCCCAAGCTATTGTTTATTGGGTCAGAAATTGGCGAGGGAGCTCATGGAAGAGTTTATGAAGGAAGGTACAGAGAACGGATTGTTGCTATCAAAGTTCTGCATCGTGGGAGTACTTTAGAAGAAAGAGTTTCACGGGAGAATCGTTTTGCTCGCGAAGTTAATATGATGTCTCGTGTCCACCATGAGAATCTTGTGAAGTTTATTGGAGCTTGTAAGGATCCTCTGATGGTTATTGTTACAGAGATGTTACCTGGTTTGTCACTGCGAAGATATCTGATCACTATACGCCCTAAACAATTAGAGCTTTATGTGGCTATAAAGTTTGCCCTTGATATTGCTCTGGCCATGGATTGGTTACATGCCAATGGAATCATACATAGAGATCTGAAGCCTGACAATCTGCTGCTCACGGCAAACCAGAAGTCGGTTAAACTTGCTGATTTTGGCCTGGCAAGAGAAGAATCTGTGACCGAAATGATGACTGCAGAAACTGGAACTTACCGTTGGATGGCACCCGAGTTGTACAGTACAGTGACATTGCGTCAAGGGGAGAAAAAGCATTACAACAATAAGGTTGATGTCTACAGCTTTGGAATTGTTTTGTGGGAGCTACTAACAAATCGCATGCCTTTTGAAGGAATGTCCAATTTACAGGCTGCTTATGCTGCCGCATTTAAGCAAGAGAGGCCTAACCTTCCTGAAGACATATCTCCTGATCTTGCGTTCATCATTCAATCATGCTGGGTTGAAGATCCTAACATGAGACCAAGCTTCAGTCAGATTATCCGCATGCTTAATAAGTTCATCCTCACTCTCCAACCACCACCATTTTCAGCACCACCTGAACCGGACGACGAACCTGAGGCCGTGACAAGTAATGGCACAATAACTGACTTTTCTACGCGAAATAAAGTAAAGTTTTCATTTATTCGCCACCTTTTTTCTTCGAAGAGGACCAAAAGCTGA 1113 0.4232 MSCRERNKGEREEKEYENSSVALKSKSARQNIGSIEDEPLTIDESLLIDPKLLFIGSEIGEGAHGRVYEGRYRERIVAIKVLHRGSTLEERVSRENRFAREVNMMSRVHHENLVKFIGACKDPLMVIVTEMLPGLSLRRYLITIRPKQLELYVAIKFALDIALAMDWLHANGIIHRDLKPDNLLLTANQKSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPNLPEDISPDLAFIIQSCWVEDPNMRPSFSQIIRMLNKFILTLQPPPFSAPPEPDDEPEAVTSNGTITDFSTRNKVKFSFIRHLFSSKRTKS 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00898 370 MobiDBLite consensus disorder prediction 1 20 - -
Vian9g00898 370 SMART serkin_6 53 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g00898 370 Pfam Protein tyrosine and serine/threonine kinase 55 314 IPR001245 GO:0004672|GO:0006468
Vian9g00898 370 Gene3D Phosphorylase Kinase; domain 1 42 132 - -
Vian9g00898 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Vian9g00898 370 MobiDBLite consensus disorder prediction 325 345 - -
Vian9g00898 370 ProSitePatterns Protein kinases ATP-binding region signature. 59 80 IPR017441 GO:0005524
Vian9g00898 370 ProSiteProfiles Protein kinase domain profile. 53 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g00898 370 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 48 315 - -
Vian9g00898 370 Gene3D Transferase(Phosphotransferase) domain 1 137 323 - -
Vian9g00898 370 MobiDBLite consensus disorder prediction 1 22 - -
Vian9g00898 370 FunFam Kinase suppressor of Ras 1 42 132 - -
Vian9g00898 370 SUPERFAMILY Protein kinase-like (PK-like) 49 332 IPR011009 -
Vian9g00898 370 CDD STKc_MAP3K-like 59 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00898 Vian-Chr9 15901384 15907650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00898 41 367 MAP Kinase Kinase Kinase AT5G01850 72.650 3.11e-177 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vian9g00898 PK_Tyr_Ser-Thr 8.5e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00898 - - gmx:100816708 637.106