Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00885 ATGAGCCAACGTGTCCCTAGCTGTGATGTGGACGACAACACCATTTCCACACCAACAAAATTCCCTCTTATTTCCACCTCCAATTTCATCGCCCATGAAGTCCCAATGTTGGGCTACAAACTGGCATGCAAAAAGGGACAACCTTCCACCCACCAACACACTCCTGCGAACCAAACAACATGGGAGATACCTCGTACAAGTGGAACCTTGGAGTCCATCGTCAACCATGGTATCGCCAAAAACTGCCACCAGTTACTTACTAAGGACGCCTTGGTGCCCTCTTTTCCCAAACAGGGAACAGTGTTTGGCGCGTGCAAGAAGGGTTACCCTGGGCGCGTGGAGTCTGGGGTGGTGGCGCGTGGTCCCCCAACCTATGAGTTGACTGGCATCAAAGACTCCAGTATGAGCGGTTGTGACACCTGTCCGAGGGAGTTGAGCGTCACTTTCAATTCAGCCACCATGGGTTTGCCTGAAAACACCACTAGCTCCGTTAAGCAGTGTACGGAGACCACTGCCAACGACTACCGTGATTCCGTAAGCCACCGTAGGTCGCAGAGTGAGGCACGGGAAGAAGATTGTAAGACAACTGGAGTTGATAGATCTTGTGAATCCAACAAAAGAATAAAAGCTTCAGCTGTACACAACCAATCTGAAAGGAGAAGGAGAGATAAGATCAACCAAAGAATGAAGGAATTGCAAAAGCTGGTCCCCAATTCCAGCAAGCAACAACTTAAGATGTCCATGCTGATGGCTCAAATGGGCATGGGAATGAGAATGAGTAAAGACATGGCTATGAATATGAACATGAATATGGATATGAATATGAATATGAATATGAACAACATGAACATTCCCACCATTGCTCCCATGCTCCATCTTCCTCCCTTCATGCCTATGGCTTCATGTGCTGATCGATTACTAGCAGATCTAGAAAAGTCAGAGACAGTGGATGCATACAGTAAGATGGCTGCTCTGTATAATCAGATGTATCATCATCCTCCAGATTCAAGTTCCAAGAAATGA 1023 0.4702 MSQRVPSCDVDDNTISTPTKFPLISTSNFIAHEVPMLGYKLACKKGQPSTHQHTPANQTTWEIPRTSGTLESIVNHGIAKNCHQLLTKDALVPSFPKQGTVFGACKKGYPGRVESGVVARGPPTYELTGIKDSSMSGCDTCPRELSVTFNSATMGLPENTTSSVKQCTETTANDYRDSVSHRRSQSEAREEDCKTTGVDRSCESNKRIKASAVHNQSERRRRDKINQRMKELQKLVPNSSKQQLKMSMLMAQMGMGMRMSKDMAMNMNMNMDMNMNMNMNNMNIPTIAPMLHLPPFMPMASCADRLLADLEKSETVDAYSKMAALYNQMYHHPPDSSSKK 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00885 340 MobiDBLite consensus disorder prediction 175 224 - -
Vian9g00885 340 Pfam Helix-loop-helix DNA-binding domain 213 247 IPR011598 GO:0046983
Vian9g00885 340 Gene3D - 204 253 IPR036638 GO:0046983
Vian9g00885 340 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 211 249 IPR036638 GO:0046983
Vian9g00885 340 MobiDBLite consensus disorder prediction 173 224 - -
Vian9g00885 340 Coils Coil 215 235 - -
Vian9g00885 340 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 209 275 IPR011598 GO:0046983
Vian9g00885 340 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 81 326 IPR031066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00885 Vian-Chr9 15309066 15312597 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00885 1 271 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 33.882 6.37e-26 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian9g00885 HLH 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00885 - - gmx:100820284 345.51