Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00883 ATGCAAGTTCTTAGTTACATTTCTTTCGTTGTAACATTTTGTTCTCTGCTCCTAAACCCTAGCCATGGTCTCAATCTCAAATTATTTAATATATCCAAATTTCAGAAAGATGATCAATGGAATGTAGCAGCAGCTACATGGTACGGAGAACCAGAGGGTGCTGGATCTGATGACAATCAAACTCCGCTCAACAATCTTAACAACCTCGACAACTACAAAAACCTCATAAAATTGGAACTTCTTGCTATGAAAATCAAGAAGAGCAACAAATGTTCCTTACAAACTAAGGTAAAGGGAGCATCAGTCCATTTTGATCTGAGTGGCACTGTATTTGGTTCCATGGCAACTCCAGGCAAAGAAAATAGTCTTCGTAACGTTGGACAACTTCAAATTCTATACAGAAGGGTTGCATGCTCCTTTGGGAACTCCATAGCCTTTAGCGTCGACAAAGGAGCCAACCCATACTATTTTGCAACTGCAATAGAATATGAAAATGGGGAAGGTGACCTTGTGGAGGTTCAGCTGAAGCAAGCTAATTCTGACACGTGGCTTCCGATGCAACGTTCATGGGGTTCAAGGTGGTCTTTGAACTTTGGTTCAAGGATGCAACCACCGTTCTCCATTAAGCTCACTGAAGATGGCAACAATAAAAGGAACACCATTGTGGCTGAAAATGTTATTCCATCTGGCTGGAAAGCTGGCCTTGTTTATCGATCTGTTGTTAATTTTTAA 732 0.4085 MQVLSYISFVVTFCSLLLNPSHGLNLKLFNISKFQKDDQWNVAAATWYGEPEGAGSDDNQTPLNNLNNLDNYKNLIKLELLAMKIKKSNKCSLQTKVKGASVHFDLSGTVFGSMATPGKENSLRNVGQLQILYRRVACSFGNSIAFSVDKGANPYYFATAIEYENGEGDLVEVQLKQANSDTWLPMQRSWGSRWSLNFGSRMQPPFSIKLTEDGNNKRNTIVAENVIPSGWKAGLVYRSVVNF 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00883 243 Gene3D - 81 139 IPR036908 -
Vian9g00883 243 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 155 239 IPR007117 -
Vian9g00883 243 PRINTS Major pollen allergen Lol pI signature 162 177 IPR005795 GO:0005576|GO:0019953
Vian9g00883 243 PRINTS Major pollen allergen Lol pI signature 93 108 IPR005795 GO:0005576|GO:0019953
Vian9g00883 243 PRINTS Major pollen allergen Lol pI signature 115 130 IPR005795 GO:0005576|GO:0019953
Vian9g00883 243 PRINTS Major pollen allergen Lol pI signature 146 161 IPR005795 GO:0005576|GO:0019953
Vian9g00883 243 PRINTS Major pollen allergen Lol pI signature 215 232 IPR005795 GO:0005576|GO:0019953
Vian9g00883 243 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 82 143 IPR007112 -
Vian9g00883 243 SUPERFAMILY Barwin-like endoglucanases 36 140 IPR036908 -
Vian9g00883 243 Pfam Expansin C-terminal domain 144 228 IPR007117 -
Vian9g00883 243 Gene3D - 140 243 IPR036749 -
Vian9g00883 243 SUPERFAMILY PHL pollen allergen 143 239 IPR036749 -
Vian9g00883 243 PANTHER EXPANSIN-B3 99 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00883 Vian-Chr9 15235138 15237107 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00883 19 243 Expansin Gene Family AT1G65680 38.247 1.48e-53 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00883 - - var:108346495 398.282