Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00882 ATGGCTCTGATATTGGATCAACAATCAAACTTCAAGCACTTTTGTAAGATTTGCAAGAAAGGTTTTGGTTGTGGAAGAGCTTTGGGAGGACACATGAGGGCTCATGGCATAGGAGATGAAGGTGGTCAAATGGATGATGACGATCAAGCTAGTGATTGGGAAGATAGGTTGGGTGGGAATGTTCCACCAAGCAACAAACGCATGTACGCTTTGAGAACAAACCCTAATAGGCTAAAGAGTTGTAGGGTATGTGAGAATTGTGGCAAGGAGTTTTTGTCGTGGAAATCTTTCCTTGAACATGGAAAATGCACCTCCGAGGATGCCGACTCCTTTGTCTCCTCTCCGGGTTCCGACGCCGATGACGGTGGCATCGCTGGTGGCGACCGAAGAGGATGTGGATGGTCCAAAAGAAAAAGGTCTTTGAGAACTAAGGTTGGTAGCTTCAATTACAATTGCCCATCCAGCGAGGAAGAAGACCTAGCAAATTGTTTAATAATGTTGTCAAATGGCACTGTAGATCCTCTCGCGCCCGAGCCTGAAGAATCGTGTGCATCCGCTAGCAAGGAGGAAGAACAACGGCGAAATCCCATGAATTTCATTGCACCATTGTCGTACAAAGTTAATAATAACAACAACAACAACAGCAATATTCACAACATGAACAACCTCGTTGACAACAAAGCCAAAGGGATTGCCAAGGGTTTGTTCGAATGCAAAGCATGCAAGAAGGTTTTCAATTCACATCAAGCGTTGGGTGGCCATAGAGCAAGCCACAAAAAGGTTAAGGGTTGTTTTGCTGCAAGACTAGACAACCTTGACGACAATCTCATCACCGACGATGATGTAATCACACACGAAGAACTCTTCCCCACAAAATCAAACTCCACCCTCCAATTCGAACATGGATCGAACCCCACGTTGCCCTCATCCTCCTCGTCCAAGAGAAAATCCAAAGTTCATGAATGTTCGATTTGCCATAGGAGTTTCTCTTCGGGACAAGCTCTTGGGGGACACAAAAGGTGTCATTGGATCACATCAAATGCACCCGACACCTCGACGTTAACGAGATTTCAACAGTTTCACGACCACTTGGATCAAATACCCAAGTTTGACACCTCTTCCGAGCCTCTTGATCTCAAATTAGACCTTAACCTTCCTGCACCTTCGAATGACCTTGCAAGAAGGAATGTTTCTACAGAAATTTACTTGCAGCCTTGGGTTACATCAAAGGATGTTAAAGATGATAACAATAGCCAATGTCAAAGTCTCCATCACAATAACAACAATGTTGACATTGACAACAACAATGACGAAGACAAAAACACAAATAACCCAATGCAAAATGTGGATAATGAGACTGATAATAAGATCAAGTTGGCCAAACTAAGTGACCTAAAAGACATGAACGTTGGAGGCACTTCTTCACCATGGTTGCAGGTGGGAATCGGTTCGGCTGCCACTGACGTCACAACCGATAACTCCTGA 1485 0.4431 MALILDQQSNFKHFCKICKKGFGCGRALGGHMRAHGIGDEGGQMDDDDQASDWEDRLGGNVPPSNKRMYALRTNPNRLKSCRVCENCGKEFLSWKSFLEHGKCTSEDADSFVSSPGSDADDGGIAGGDRRGCGWSKRKRSLRTKVGSFNYNCPSSEEEDLANCLIMLSNGTVDPLAPEPEESCASASKEEEQRRNPMNFIAPLSYKVNNNNNNNSNIHNMNNLVDNKAKGIAKGLFECKACKKVFNSHQALGGHRASHKKVKGCFAARLDNLDDNLITDDDVITHEELFPTKSNSTLQFEHGSNPTLPSSSSSKRKSKVHECSICHRSFSSGQALGGHKRCHWITSNAPDTSTLTRFQQFHDHLDQIPKFDTSSEPLDLKLDLNLPAPSNDLARRNVSTEIYLQPWVTSKDVKDDNNSQCQSLHHNNNNVDIDNNNDEDKNTNNPMQNVDNETDNKIKLAKLSDLKDMNVGGTSSPWLQVGIGSAATDVTTDNS 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00882 494 Gene3D Classic Zinc Finger 233 342 - -
Vian9g00882 494 MobiDBLite consensus disorder prediction 294 315 - -
Vian9g00882 494 ProSitePatterns Zinc finger C2H2 type domain signature. 238 258 IPR013087 -
Vian9g00882 494 PANTHER OS02G0659100 PROTEIN 2 486 - -
Vian9g00882 494 MobiDBLite consensus disorder prediction 439 453 - -
Vian9g00882 494 MobiDBLite consensus disorder prediction 294 313 - -
Vian9g00882 494 SUPERFAMILY beta-beta-alpha zinc fingers 13 101 IPR036236 -
Vian9g00882 494 MobiDBLite consensus disorder prediction 38 59 - -
Vian9g00882 494 SUPERFAMILY beta-beta-alpha zinc fingers 235 342 IPR036236 -
Vian9g00882 494 ProSitePatterns Zinc finger C2H2 type domain signature. 15 35 IPR013087 -
Vian9g00882 494 ProSiteProfiles Zinc finger C2H2 type domain profile. 236 263 IPR013087 -
Vian9g00882 494 ProSitePatterns Zinc finger C2H2 type domain signature. 322 342 IPR013087 -
Vian9g00882 494 MobiDBLite consensus disorder prediction 423 453 - -
Vian9g00882 494 MobiDBLite consensus disorder prediction 109 129 - -
Vian9g00882 494 Gene3D Classic Zinc Finger 11 103 - -
Vian9g00882 494 Pfam C2H2-type zinc finger 236 260 - -
Vian9g00882 494 Pfam C2H2-type zinc finger 319 344 - -
Vian9g00882 494 Pfam C2H2-type zinc finger 13 35 - -
Vian9g00882 494 ProSiteProfiles Zinc finger C2H2 type domain profile. 320 342 IPR013087 -
Vian9g00882 494 SMART c2h2final6 320 342 IPR013087 -
Vian9g00882 494 SMART c2h2final6 236 258 IPR013087 -
Vian9g00882 494 SMART c2h2final6 13 35 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00882 Vian-Chr9 15198587 15200071 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00882 136 385 C2H2 Transcription Factor Family AT1G02040 35.458 8.74e-32 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian9g00882 zf-C2H2_6 1.6e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00882 - - gmx:100793846 796.578