Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00860 ATGAGCTATCTAAGGCATTTGAATCTGAATCAATCAATTATGGGAAACGGTGTTTGCAGTTTGCTGCTTATGGCCTTCTGTATGATGGCTGAGCTAGCATATTCCATCAATCAGGAACGACAGGCTTTGCTCCATAGCGGTTGGTGGAATGATAACCGTAATATCTCAAACCATTGTGATTGGGACGGCATCTCTTGCAATGAAGGTGGAAATGTTATTATTATTGGTGGTTCGTCGATGAGGATTCCTTCATCAAAAGAATTGCTTTCGATTGAGAAGTTGAACGTCACTGCCTTCCCCAGTTTAGAGTATCGGAATCTAGATGGAATGGGTCTTAGAGGAAGCATCCCCACAGAAATAAGCACACTTACAAACCTTACCTATTTCATCTTGTCCCACAATCATCTGCATGGTTTAATCCCATCTACACTGGGTAATTTGAAGAATTTGCGTGCTCTCCTTCTTCATTCAAACAAACTTGAAGGTACAATACCACCGCAACTTGGTAACTTGACACAATTGGGGAACTTATTTCTCTGTGAGAATTCTCTAACAGGTTCAATACCTCAGCAACTTGGTAACTTGACACAATTGGAGGTCTTATTTCTATGTAAGAATTCTCTAGCAGGTTTAATCCCATCTACATTGGGTCAATTGATGAATTTACAATATCTCTATCTTGAATCAAACAAACTTGAAGGTAGGATTCCCACAGAATTAGGGAATTTGACAAAATTACGGATATTACTTCTGTCAGGAATTTCAACAAAGAATGGAGACTTGTTTTCTATATGGAACTATGATGGTAAAATTGCATTTGAAGATATCATTGAAGCAACTGAAGGCTTTGATCTCAAGTATTGCATTGGGACAGGCGCATATGGTAGTGTATATAGAGCACAACTTCCAGTGGACATATTGGTGAATATCATTAAAGGCATGGCAGAGGCTTTGTCCTACATGCATCATGATTGTAGTCCACCAATTGTTCACCGAGATGTAACAAGTAGCAATATTTTGTTAAACTCGCAATTAGAGGCTTTTGTCTCAGACTTTGGCACATCTAGACTCCTTGATCCCGATTCTTCAAATCAAACCTTAGTAGTTGGCACCTATGGCTACATTGCTCCAGAGTTTGCTTATACATTGAGTGTGACAAAAGAATGTGATGTTTATAGTTTTGGAGTGGTGGCTTTGGAAGCATTAATGGGAAAACATCCTAGAGAGTTAATCTCATCTTTAGTAAACCTAACTATTCCAAATATGTTAGTGAAAGATCTCTTGGATTCACGCCTTCCTCTTCCTCGTCGGAAAGATGCTCAAGATATAAATCTTGTGATAACAGTAGCATTAGCATGTTTATGCTCTAAACCAAACATGAGGCCATCAATGCAACTAGTGGTTCAGAAACTTTCTAGTTTTAAAGTTTCATTATTTTTGCCTTTCCATGAAGTTTGGATCCATCAATTGATGAGTCAAGACATAGGTCATCTTTCATCCAAGTGTCAAGAATGA 1515 0.3848 MSYLRHLNLNQSIMGNGVCSLLLMAFCMMAELAYSINQERQALLHSGWWNDNRNISNHCDWDGISCNEGGNVIIIGGSSMRIPSSKELLSIEKLNVTAFPSLEYRNLDGMGLRGSIPTEISTLTNLTYFILSHNHLHGLIPSTLGNLKNLRALLLHSNKLEGTIPPQLGNLTQLGNLFLCENSLTGSIPQQLGNLTQLEVLFLCKNSLAGLIPSTLGQLMNLQYLYLESNKLEGRIPTELGNLTKLRILLLSGISTKNGDLFSIWNYDGKIAFEDIIEATEGFDLKYCIGTGAYGSVYRAQLPVDILVNIIKGMAEALSYMHHDCSPPIVHRDVTSSNILLNSQLEAFVSDFGTSRLLDPDSSNQTLVVGTYGYIAPEFAYTLSVTKECDVYSFGVVALEALMGKHPRELISSLVNLTIPNMLVKDLLDSRLPLPRRKDAQDINLVITVALACLCSKPNMRPSMQLVVQKLSSFKVSLFLPFHEVWIHQLMSQDIGHLSSKCQE 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00860 504 SUPERFAMILY L domain-like 47 255 - -
Vian9g00860 504 FunFam Nuclear pore complex protein NUP107 26 185 - -
Vian9g00860 504 Gene3D Ribonuclease Inhibitor 28 165 IPR032675 -
Vian9g00860 504 Gene3D Transferase(Phosphotransferase) domain 1 294 478 - -
Vian9g00860 504 SMART LRR_typ_2 123 146 IPR003591 -
Vian9g00860 504 SMART LRR_typ_2 147 171 IPR003591 -
Vian9g00860 504 SMART LRR_typ_2 219 243 IPR003591 -
Vian9g00860 504 SMART LRR_typ_2 195 218 IPR003591 -
Vian9g00860 504 Pfam Protein kinase domain 306 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g00860 504 ProSitePatterns Tyrosine protein kinases specific active-site signature. 329 341 IPR008266 GO:0004672|GO:0006468
Vian9g00860 504 Pfam Leucine rich repeat 173 232 IPR001611 GO:0005515
Vian9g00860 504 Gene3D Ribonuclease Inhibitor 166 264 IPR032675 -
Vian9g00860 504 ProSiteProfiles Protein kinase domain profile. 186 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g00860 504 SUPERFAMILY Protein kinase-like (PK-like) 273 480 IPR011009 -
Vian9g00860 504 PANTHER LEUCINE RICH REPEAT KINASE 2 253 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00860 Vian-Chr9 13877017 13880289 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00860 59 473 Receptor kinase-like Gene Family AT2G35620 29.942 2.54e-43 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vian9g00860 Pkinase 2.1e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00860 - - var:108346284 389.423