Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00859 ATGGCGAATTACATTATAAAAAATATAGTTGATGAGTTATTGAAGGCACTTGAATCTGACTCAATCAAGAACGACAGTCTTTGCTCCGCAGTGGTTGGTGATCATCCAAATATCTCAAACCATTGTGATTGGGAGGGTATCTCTTGCAATGAAGCTGAAAGTGTTACTGAAATTGTCAGAGGTCCCTTGAGAATTCCTTCATCAAAAGAATTGCTTTGGATTCAGAATTTGAACATCACTGCCTTTCCCAGTTTACTCATTCTGTATCTATCTGGAATGGGTCTTAGAGGAACCATCCCCACAGAAATAACCACACTTACAAACCTTACTTCTCTTGTCTTGTCTAAGAATCATCTCCATGGAATATCAACAAAGAATGGGGACTTGTTTTCCATATGGAACTATGATGGGAAAATTGCATTTGAGGATATTATTGAAGCAACTGAAGATTTTGATCTCAAGTATTGCATTGGGACGGGCGCATACGACTTTGGCACATCTCTTGATCCTGATTCTTCAAATCAAACCTTAGTAGTTGGCACCTTTGGCTACATTGCTCCAGAGGTTGCGTATACATTTAGCATGACAGAAAAATGTGATGTTTATTGTTTTGGAGTGGTGGCTTTGGAAGAATTAATGGGAAAACATCCTGGAGAGCTAATCTCATCTTTAGTAGACCTAACTACTCAAAATATGTTAGTGAAAGATCTCTTGGATTCACGTCTTCCTCTTCCACTTCAGAAAGATGCTCAAGATATAAAGCTTGCTTTAACAATATCATTCTCATGTTTGTGCTCCAAATCAAACCTGAGGCCATCAATGGAACAAGTGGCTGATAAACTGTTTAGTCTCAAACTGTCATTATCTGTACCTTTTCATGAAGTTTTGATCCATCAATTGATGAATCGAGATATATTGCAAAACTATACTACTTGA 936 0.3771 MANYIIKNIVDELLKALESDSIKNDSLCSAVVGDHPNISNHCDWEGISCNEAESVTEIVRGPLRIPSSKELLWIQNLNITAFPSLLILYLSGMGLRGTIPTEITTLTNLTSLVLSKNHLHGISTKNGDLFSIWNYDGKIAFEDIIEATEDFDLKYCIGTGAYDFGTSLDPDSSNQTLVVGTFGYIAPEVAYTFSMTEKCDVYCFGVVALEELMGKHPGELISSLVDLTTQNMLVKDLLDSRLPLPLQKDAQDIKLALTISFSCLCSKSNLRPSMEQVADKLFSLKLSLSVPFHEVLIHQLMNRDILQNYTT 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00859 311 Gene3D Transferase(Phosphotransferase) domain 1 139 290 - -
Vian9g00859 311 ProSiteProfiles Protein kinase domain profile. 1 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g00859 311 SUPERFAMILY L domain-like 36 123 - -
Vian9g00859 311 Pfam Protein kinase domain 163 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g00859 311 Gene3D Ribonuclease Inhibitor 11 135 IPR032675 -
Vian9g00859 311 SUPERFAMILY Protein kinase-like (PK-like) 163 293 IPR011009 -
Vian9g00859 311 PANTHER LEUCINE RICH REPEAT KINASE 2 122 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00859 Vian-Chr9 13821394 13825887 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00859 150 285 Receptor kinase-like Gene Family AT4G26540 33.333 4.55e-14 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vian9g00859 Pkinase 8.9e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00859 - - var:108346284 215.312