Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00848 ATGCTTTCAATTTGGAACTATGATGGTAAGATTGCATTTGAAGACATAATTAAGGCCACAGAAGACTTTGATATAAAGTATTGCATAGGAACGGGTGCTTATGGGAGTGTGTACAAAGCACAACTTCCCAGTGGCAGAATTGTTGCACTGAAAAAACTTCACAAAGCAGAATCTGAAAATCCATCCTCTTACAAGAGCTTTTGCAATGAGACCAAAATCTTGACAGAAATTCGCCATCGTAACATCATCAAGCTTTATGGTTTTTGTTTGCATAACAAGTGTATGTTTTTAGTGTATGAGTATATGGAAAGAGGAAGCTTATTTTGCAACTTGTCTTATGATGTTGAAGCTCAAGAGCTGAATTGGAGCAAGAGGATAAATGTTGTAAAAGGAATAGCCTATGGCTTGGCTCACATGCACCATGATTGTACCCCACCCATTGTTCATAGAGACATAAGCAGTAACAACATTTTGTTAAACTCAGAGTTGCAGGCTTTCATCTCAGACTTTGGCACTGCAAGACTTCTTGATTTGCATTCATCAAATCAGACTCTTCCTGCTGGTACTTATGGATATGTTGCTCCAGAATTGGCTTACACCTTGAGTGTGACCACCAAATGTGATGTTTATAGCTTTGGAGTGGTGGTATTGGAAGCAATGATGGGTAGACATCCAGCTGAATTGATTTCTTGTTTATCAGAACCATCCATTCAGAAGAAGAAGCTGAAAGATATATTGGACTCACGTATTCCACTACCATATTTTAGAAAAGATATGCAAGATATTGTGCTTGTTGTAACATTGGCATTAGCATGTTTGAGTCCCCACCCAAAATCCAGACCATCAATGCAGGAAATAGCTAATGAGCTTTTAGCTTCCAAGCCACCATTGCTTTGGCATTTTGATAGCATTTCCATCCACCAACTCATGAAGCAAAAAGTATATATAATTGGTAGAAGTTAG 963 0.3832 MLSIWNYDGKIAFEDIIKATEDFDIKYCIGTGAYGSVYKAQLPSGRIVALKKLHKAESENPSSYKSFCNETKILTEIRHRNIIKLYGFCLHNKCMFLVYEYMERGSLFCNLSYDVEAQELNWSKRINVVKGIAYGLAHMHHDCTPPIVHRDISSNNILLNSELQAFISDFGTARLLDLHSSNQTLPAGTYGYVAPELAYTLSVTTKCDVYSFGVVVLEAMMGRHPAELISCLSEPSIQKKKLKDILDSRIPLPYFRKDMQDIVLVVTLALACLSPHPKSRPSMQEIANELLASKPPLLWHFDSISIHQLMKQKVYIIGRS 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00848 320 FunFam Leucine-rich repeat receptor protein kinase MSP1 1 101 - -
Vian9g00848 320 ProSitePatterns Protein kinases ATP-binding region signature. 29 51 IPR017441 GO:0005524
Vian9g00848 320 ProSiteProfiles Protein kinase domain profile. 23 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g00848 320 Gene3D Transferase(Phosphotransferase) domain 1 102 296 - -
Vian9g00848 320 PIRSF ILK 10 294 - -
Vian9g00848 320 Pfam Protein kinase domain 27 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g00848 320 SUPERFAMILY Protein kinase-like (PK-like) 11 290 IPR011009 -
Vian9g00848 320 PANTHER LEUCINE RICH REPEAT KINASE 2 2 295 - -
Vian9g00848 320 FunFam MDIS1-interacting receptor like kinase 2 102 296 - -
Vian9g00848 320 ProSitePatterns Tyrosine protein kinases specific active-site signature. 147 159 IPR008266 GO:0004672|GO:0006468
Vian9g00848 320 Gene3D Phosphorylase Kinase; domain 1 3 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00848 Vian-Chr9 13408839 13410742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00848 2 195 Receptor kinase-like Gene Family AT4G08850 59.898 5.60e-73 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vian9g00848 Pkinase 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00848 - - vun:114165534 641.343