Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00844 ATGGGGCGTATGCACAGTCGCGGTAAGGGTATCTCCAGTTCGGCTCTTCCATATAAGAGGACCCCACCTAGCTGGTTGAAGATTTCGTCGCAGGATGTGGAGGAAAACATCTGCAAGTTTGCCAAGAAAGGTCTCACTCCATCCCAAATTGGTGTTATTCTTCGTGACTCTCATGGAATTGCTCAGGTTAGGAGTGTCACTGGAAGCAAGATTCTACGTATATTGAAAGCCCATGGGCTTGCTCCTGAAATTCCTGAGGATTTGTATCACTTGATCAAAAAGGCTGTCTCCATTAGGAAGCACTTGGAGAGGAATAGGAAGGACAAGGATTCTAAATTCAGGTTAATTTTGGTTGAGAGTAGGATTCACCGCCTTGCCCGTTACTACAAGAAGACTAAGAAGCTCCCACCCGTGTGGAAATACTATATGATGTCACAGTGCTTCCCTGTTGTTAGTGCTAATATTTGTTTGGTTTATCTTAATTGCAGTGAATCTACAACTGCCAGCACCCTTGTGGCTTAG 522 0.4483 MGRMHSRGKGISSSALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYYMMSQCFPVVSANICLVYLNCSESTTASTLVA 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00844 173 FunFam 40S ribosomal protein S13 83 148 - -
Vian9g00844 173 CDD Ribosomal_S15p_S13e 70 141 IPR000589 GO:0003735|GO:0005840|GO:0006412
Vian9g00844 173 Gene3D - 83 147 - -
Vian9g00844 173 Pfam Ribosomal S13/S15 N-terminal domain 1 60 IPR012606 GO:0003735|GO:0005840|GO:0006412
Vian9g00844 173 ProSitePatterns Ribosomal protein S15 signature. 98 128 IPR000589 GO:0003735|GO:0005840|GO:0006412
Vian9g00844 173 SUPERFAMILY S15/NS1 RNA-binding domain 66 141 IPR009068 -
Vian9g00844 173 PANTHER RIBOSOMAL PROTEIN S15P/S13E 1 144 IPR023029 -
Vian9g00844 173 SMART Ribosomal_S15_2 70 141 IPR000589 GO:0003735|GO:0005840|GO:0006412
Vian9g00844 173 SMART Ribosomal_S13_N_2 1 60 IPR012606 GO:0003735|GO:0005840|GO:0006412
Vian9g00844 173 Pfam Ribosomal protein S15 74 141 IPR000589 GO:0003735|GO:0005840|GO:0006412
Vian9g00844 173 FunFam 40S ribosomal protein S13 35 82 - -
Vian9g00844 173 Gene3D - 35 82 - -
Vian9g00844 173 Hamap 30S ribosomal protein S15 [rpsO]. 3 149 IPR023029 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00844 Vian-Chr9 13317769 13319625 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00844 1 173 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 81.503 8.19e-98 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00844 K02953 - egr:104442246 287.73