Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00828 ATGGTACTAACCTGGACGCCAGAGATCTGTGAGGCCACGACAGGACGAACGCAAAGCGTGGTAAGGACGAACGCAAAAGGGACGAACGCAGAGTCTTGGCACGAAGGACGAACGCTTGCACAAGAGGGAGGGCGGAGACAAAATACAGTGGTGGTAGAGGATACGGGGGAGAGAAGAATGGCGGAGGAAGACGGAGAGAAAAAGAGGGAGGGTGTTCTATGTGATGAAGCCGGAAGTGTTACTTCGATCGGCTTATCTTCTCTGCTCCCTTTCACAATTCCTCCAATGCAAGAACTGCAAAACTTGAATGTGACTGCCTTTCCCAATTTGCAGTTTCTGGATTTGAATGGAATGGGTCTGAGGGGAAGCATCCCTGCAGAAATTGGCACACTTACAAAGCTCACCTATCTTGATTTGTCTGACAATAGCCTCCAAGATTTTGCTTTGTGCTTTAGTTCCCTCCAAACTAATTCTCAGACTAGTGAAGTTAATCTTAGCATTGAAATTGCTCTTCCCATCATCTTCACCCTTCTTGTTGTAATCCTTCTATCTCTATATTTAACAAGACGCAAGTCTAGAATCAAATTTGATGCAAGCTTATCGAAAAATGGAGACTTGTTTTCTATATGGAATTATGATGGTAAAATTGCATTTGAAGATATCATTAAAGCAACAGAAGACTTTGACATCAAATACTGCATTGGGACTGGTGCATATGGCAGCGTTTATAGAGCCCAATTACCGACTGGAAAGATTGTTGCACTGAAGAAACTTCACCGAATTGAATCTCAAAATCCATCTTTCAATAAAAGTTTTCAAAATGAGGTGAAGATGTTAACAAAAATCCGTCATAGAAACATTGTAAAGCTTCATGGCTTTTGCCTACACAATCGGTACATGTTTCTTATCTATCAATACATGGAAAGAAGTAGCTTATTTTATATGTTGAATGATGATGTGGAAGCTGATTTTGGCACAGCTAGACTCCTTGATCCAGATTCTTCAAATCAAACCTTGGTAGTTGGTACATATGGCTACATTGCCCCAGACATCCTAGATGCACGAATTCCTCTTCCTAACTCTCGAAAAGATGCTGAAGATATAATGCTTGCTGCAACAATAGCATTAAGATGTTTGTGTTTGAAACCAAAGTTCAGGCCATCAATGCAAGAGGTGGTTGGAGAGCTCTGTAATTTCAAATTGTTGACACCTTTTTCGTTCAGTGAGATTTTGATCCATCAGTTGATGACTCCAAAAGAACAAGATGCACAAGTCTAA 1278 0.41 MVLTWTPEICEATTGRTQSVVRTNAKGTNAESWHEGRTLAQEGGRRQNTVVVEDTGERRMAEEDGEKKREGVLCDEAGSVTSIGLSSLLPFTIPPMQELQNLNVTAFPNLQFLDLNGMGLRGSIPAEIGTLTKLTYLDLSDNSLQDFALCFSSLQTNSQTSEVNLSIEIALPIIFTLLVVILLSLYLTRRKSRIKFDASLSKNGDLFSIWNYDGKIAFEDIIKATEDFDIKYCIGTGAYGSVYRAQLPTGKIVALKKLHRIESQNPSFNKSFQNEVKMLTKIRHRNIVKLHGFCLHNRYMFLIYQYMERSSLFYMLNDDVEADFGTARLLDPDSSNQTLVVGTYGYIAPDILDARIPLPNSRKDAEDIMLAATIALRCLCLKPKFRPSMQEVVGELCNFKLLTPFSFSEILIHQLMTPKEQDAQV 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00828 425 ProSitePatterns Protein kinases ATP-binding region signature. 234 256 IPR017441 GO:0005524
Vian9g00828 425 Gene3D Phosphorylase Kinase; domain 1 192 306 - -
Vian9g00828 425 SUPERFAMILY Protein kinase-like (PK-like) 215 403 IPR011009 -
Vian9g00828 425 FunFam Leucine-rich repeat receptor protein kinase MSP1 190 306 - -
Vian9g00828 425 Gene3D Ribonuclease Inhibitor 56 188 IPR032675 -
Vian9g00828 425 PANTHER LEUCINE RICH REPEAT KINASE 2 322 349 - -
Vian9g00828 425 SUPERFAMILY L domain-like 85 154 - -
Vian9g00828 425 Pfam Protein kinase domain 232 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g00828 425 ProSiteProfiles Protein kinase domain profile. 228 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00828 Vian-Chr9 12531579 12540209 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00828 109 352 Receptor kinase-like Gene Family AT4G08850 35.952 1.24e-47 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vian9g00828 Pkinase 5.6e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00828 - - gmx:102667972 353.214