Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00827 ATGGAAGCCAGAGAAGGTATTAGTTCTGGGGTTACAGTGATAGGGGCAGAAGCTCCATCAGCTTATCATGTGGCGCCAAGGAGTGAAGCTCCAAACCAGGTTCATGTCCCTGATGGTGGTGGTGGTGGTGGCGGCGGCGGCATTGGTGGTGCTGCAGCTATTGGTATCTCACCGGTAAGTGTGGGGTTGGATGGATCAGCAAAGAAGAAAAGAGGTAGACCAAGGAAATATGGGCCTGATGGGTCTGTCACTATGGCATTGTCACCAATGCCAATCTCGTCTTCTGCACCATCTTCTAATGATTTTTCATCTGGCAAGAGGGGGAAAATGCGGGGTATGGAGTATAAGCAGTCGAAAAAACTTGGTTTGGATTATCTAGGTGACTTGAATGCATGCTCTGATGGTACAAATTTTATGCCACACATCATCACTGTCAATGCTGGTGAGGACATTACAATGAAGGTGATATCCTTCTCTCAACAAGGGCCAAGAGCTATATGTATCTTATCTGCTAATGGTGTCATTTCAAATGTTACACTTCGACAGCCTGATTCTTCTGGGGGTACTTTAACTTATGAGGGCCGTTTTGAGATACTTTCCTTGTCTGGATCATTCATGCCTACTGACAACCAAGGTACAAGAAGCAGGTCTGGTGGAATGTCTGTCTCTCTGGCTAGCCCCGACGGCCGTGTTGTCGGTGGTGGAGTTGCCGGTCTTCTTGTAGCTGCCAGTCCTGTGCAGGTGGTGGTGGGAAGCTTTTTACCAAGCAGCCAGCAAGAGCAGAAACTAAAAAAGCCTAAGTCTACTGATTATGCAGCAGCAGCAGCTATTTCTCCGGTTATTGCATTGACTCCAACACCGGCGCCACCGCCACCAGCGGCGAGCAATCCTGAAAAAGAGGATGTGAATATTAATGTAATGAGTGGAGCACATGTGCTGCAAAATTCAGGAAGTATTAACTCTAACCTGAGTCCTCCGAATGCCTTTAGAAGAGATAACTGGGTGAACATGCACTCTATGGCAGACTCAAGAAAGTCAGCTACTGATATTAACATATCTTTGCCTGATTGTTAA 1074 0.4693 MEAREGISSGVTVIGAEAPSAYHVAPRSEAPNQVHVPDGGGGGGGGGIGGAAAIGISPVSVGLDGSAKKKRGRPRKYGPDGSVTMALSPMPISSSAPSSNDFSSGKRGKMRGMEYKQSKKLGLDYLGDLNACSDGTNFMPHIITVNAGEDITMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTDNQGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLPSSQQEQKLKKPKSTDYAAAAAISPVIALTPTPAPPPPAASNPEKEDVNINVMSGAHVLQNSGSINSNLSPPNAFRRDNWVNMHSMADSRKSATDINISLPDC 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00827 357 Pfam Plants and Prokaryotes Conserved (PCC) domain 140 253 IPR005175 -
Vian9g00827 357 ProSiteProfiles PPC domain profile profile. 135 277 IPR005175 -
Vian9g00827 357 MobiDBLite consensus disorder prediction 63 109 - -
Vian9g00827 357 CDD DUF296 140 230 IPR005175 -
Vian9g00827 357 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 26 318 IPR039605 GO:0003680
Vian9g00827 357 SUPERFAMILY AF0104/ALDC/Ptd012-like 138 258 - -
Vian9g00827 357 Gene3D - 140 271 - -
Vian9g00827 357 MobiDBLite consensus disorder prediction 87 105 - -
Vian9g00827 357 FunFam AT-hook motif nuclear-localized protein 1-like 140 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00827 Vian-Chr9 12435346 12438665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00827 10 267 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 60.279 9.56e-95 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00827 - - ccaj:109801852 549.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00827 9 12435346 12438665 Vian9g00827 9 12435346 12438665 ECH
Vian2g00750 2 10831589 10834809 Vian9g00827 9 12435346 12438665 PCT