Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00825 ATGGATTATGGAGGAAAGATTGGTGGAAGTGAAAGAGGTGGGCCTTGTGGTGCCTGCAAGTTTCTGAGGAGAAAGTGTGTGAAGAGTTGCATTTTTGCACCATACTTTGACTCAGACCAAGGAACTGCACATTTTGCTGCAGTTCACAAGGTGTTTGGTGCAAGCAATGCCTCTAAGTTACTCATGAGAATCCCTGCACACAAGCGTCTTGATGCTGTTGTTACTCTTTGCTATGAGGCTTTGGCTAGGGCTAGAGATCCTGTTTATGGTTGTGTTGGTCACCTCTTTGCTCTTCAACAACAGGTTATGAACTTGCAGGCTGAGTTGACCTATGTTCAAGCCCGTTTGGCCACAATGCAGCGCATGCCAATGGCAGTAGCTCCTCTTCCACACCCTCAAAGTTCATCACCACAAACTCTTCCTTCCTCAGATCATTTGGCATCAAATGCTGAAATGCAGAGTGTCCCTATGATGCAGTATGATCCTCTTCAACCACATTCAGCATCATTAGAGTTAAGCAGCATCCTTTTCAACCAATCAGATCAACAGCTGGAGGATAGGGAACTCCAAACTTTGGCTCGAGAATTTGTCACCAAATACTTGCCCGGAGTAAGATTCCAGCAATCTAACTCTCCCTAA 639 0.4554 MDYGGKIGGSERGGPCGACKFLRRKCVKSCIFAPYFDSDQGTAHFAAVHKVFGASNASKLLMRIPAHKRLDAVVTLCYEALARARDPVYGCVGHLFALQQQVMNLQAELTYVQARLATMQRMPMAVAPLPHPQSSSPQTLPSSDHLASNAEMQSVPMMQYDPLQPHSASLELSSILFNQSDQQLEDRELQTLAREFVTKYLPGVRFQQSNSP 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00825 212 ProSiteProfiles LOB domain profile. 14 116 IPR004883 -
Vian9g00825 212 PANTHER LOB DOMAIN CONTAINING PROTEIN 12 154 - -
Vian9g00825 212 Pfam Lateral organ boundaries (LOB) domain 15 113 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00825 Vian-Chr9 12317867 12321227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00825 13 210 AS2 family AT4G00210 53.704 5.60e-72 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vian9g00825 LOB 3.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00825 - - gmx:100791377 373.629