Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00816 ATGGTCAAGGAAGAGAAAGAGAACTCTTTCAACAGTGTTGAACTTCATCTTGGGGTTGATGCTTCTCATTCTGCGTCACCAGAAATAAACCATGTGATCACTGAAGCTCAGAGGCGTGAGCTTCACCACCAGGTTTTCATCTTCAACCACTTAGCTTATAAACTTCCTCCTCCTCATCACCGTGTCCAATTCCAAAGCAACATGTCAGAATACAGTTTCCTTGGTTTTGATCAAGGGAGTAGGATGGTTCCAGAACCTCATAGGTGTAGAAGAACAGATGGAAAGAAATGGAGATGCAGTAAGAGTGTAGTGCCTGGTCAAAAGTACTGTGAAAGGCACATGCATAGAGGTCGAAATCGTTCAAGAAAGCCTGTGGAAACATCTCAAGTTAACTCTCCTTTGGCACCAAAACCTTGTAGCAAGTCACCTACCAAATCAGCTTCAGAGACACTATTTGAAATTTCAAATCCAAACCTTATCATGGCCATGCAACCTAGTGACACACCTTCCAGTACTCCATCAAGGAGCCTCAGCATTGACAATTGCTCTTCTATGAACAGGTCCTTCATGGTGTTTTCTTCTACCTTTGCGGCATCCCCTGGCTCCGGCCTTGCCTCTGCCAGTGCTCCTAAGGCGGCAGTAACACTCGGCAGTGTGGCATCTGTTGCTTCAGATGACAAAAGTTGCCTAAAGATGTGCAAGAAAGATAACCAGTCCAAGAGTTGTGTCAGTAACAACACAGGCAATAGAAGTGATGGGAAAGGAAGCATTGTTGGTGATTCTAATAACATCTCTACTGGAATAAGCTTCTCCCCAACAAGTGTTCTTCAAGTTTTTGGTAACAACCCATCTCACCTGATTGACAAAACCAACATAGAATCTGCACCAGACAGGTGTCGGAGAACGGACGGCAAGAAGTGGCAATGCAAGAGTGCTGTTCTTCCTGGTCAGAAGTACTGTGCCACACACATGCACAGAGGTGCTAAAAAGCGTTTTGCAAACCATGAAATAGCAGCAGCAGCTAAAACCACCACAACTACTTGTTCTGCCGTTACCATTGCACGGTTGCCGAACTCTCAAGCCACAACCGACGTGCTGAAAGAGGGTTCTGCAATTCCAAGTACAAATCTTTCCATGTCAGTTCCAGCAAGTGCTCCTTTCATACAATGCAATGGGAAAGGCTCCAGTAACAGTGACACTGATACCACCATCAGTGACACCTTGCAAGAGTGTAGCTATACTTCTTTCTGA 1251 0.4516 MVKEEKENSFNSVELHLGVDASHSASPEINHVITEAQRRELHHQVFIFNHLAYKLPPPHHRVQFQSNMSEYSFLGFDQGSRMVPEPHRCRRTDGKKWRCSKSVVPGQKYCERHMHRGRNRSRKPVETSQVNSPLAPKPCSKSPTKSASETLFEISNPNLIMAMQPSDTPSSTPSRSLSIDNCSSMNRSFMVFSSTFAASPGSGLASASAPKAAVTLGSVASVASDDKSCLKMCKKDNQSKSCVSNNTGNRSDGKGSIVGDSNNISTGISFSPTSVLQVFGNNPSHLIDKTNIESAPDRCRRTDGKKWQCKSAVLPGQKYCATHMHRGAKKRFANHEIAAAAKTTTTTCSAVTIARLPNSQATTDVLKEGSAIPSTNLSMSVPASAPFIQCNGKGSSNSDTDTTISDTLQECSYTSF 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00816 416 ProSiteProfiles WRC domain profile. 83 127 IPR014977 -
Vian9g00816 416 Pfam WRC 84 126 IPR014977 -
Vian9g00816 416 Pfam WRC 296 331 IPR014977 -
Vian9g00816 416 MobiDBLite consensus disorder prediction 112 145 - -
Vian9g00816 416 MobiDBLite consensus disorder prediction 124 145 - -
Vian9g00816 416 MobiDBLite consensus disorder prediction 238 258 - -
Vian9g00816 416 PANTHER GROWTH-REGULATING FACTOR 5 279 389 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vian9g00816 416 ProSiteProfiles WRC domain profile. 293 338 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00816 Vian-Chr9 11986973 11990358 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00816 36 331 GRF Transcription Factor Family AT2G45480 32.727 1.36e-32 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00816 - - pvu:PHAVU_010G048400g 653.669