Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00805 ATGATAAAGGACAAGCTTGAAGCTTTGGAACGTTCAAATGCAGCCAATAGAAACCTCCCAGGATGTGGTCCGGGTTCCTCAACAGATCGAACCAGAACCTCGGTGGCCAGTGGCTTAGGGAAGAAATTAAAGGACATGGTGGACGATTTTCAAGGGCTGAGAGCAAGAATGCAAAACGAGTACAAGGAAACCGTAGAACGTAGGTACTTCACCATAACAGGAGAGAAGGCCGATGAAGATACCATTGAGAACTTGATATCAAGCTGTGGAAGTGAAAGTTTTCTTCAAAGGGTAATTCAAAAACATGGTAGAGGTCAGATAATGGACACCATATCAGAGATTCAAGAGAGACATGATTCTCTTAAGGAGATAGAGAAGAACTTGATGGAGTTGCATCAGGTGTTTTTGGACATGGAAGCTCTTGTAGAGTCTCAAGAGGCACAGAAAAACTTCATGAAGCCAGAGAGTATCAAAAGAGCTCGAGGGAATGGACTTGTTACACCATTCTTCTTGGCATTGTTCTTGTCATTGTGCTCTTGTTTCATCTCTTGA 552 0.4293 MIKDKLEALERSNAANRNLPGCGPGSSTDRTRTSVASGLGKKLKDMVDDFQGLRARMQNEYKETVERRYFTITGEKADEDTIENLISSCGSESFLQRVIQKHGRGQIMDTISEIQERHDSLKEIEKNLMELHQVFLDMEALVESQEAQKNFMKPESIKRARGNGLVTPFFLALFLSLCSCFIS 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00805 183 CDD SynN 1 98 IPR006011 GO:0016020
Vian9g00805 183 Pfam Syntaxin 2 145 IPR006011 GO:0016020
Vian9g00805 183 CDD SNARE_syntaxin1-like 110 145 - -
Vian9g00805 183 Gene3D - 1 142 - -
Vian9g00805 183 MobiDBLite consensus disorder prediction 19 35 - -
Vian9g00805 183 SUPERFAMILY t-snare proteins 3 147 IPR010989 GO:0016020|GO:0016192
Vian9g00805 183 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 111 145 IPR000727 -
Vian9g00805 183 PANTHER SYNTAXIN 2 148 IPR045242 -
Vian9g00805 183 MobiDBLite consensus disorder prediction 13 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00805 Vian-Chr9 11509293 11509902 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00805 1 150 SNARE and Associated Proteins AT1G11250 78.667 2.80e-84 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00805 K08486 - gmx:100781569 257.684