Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00784 ATGGTTGCAATGGATTGGGGCTTTGATTCTGCACTTTCATTGATGAGCTATGAAAGATCCTTGACCTTGCGAATTGTCTTCGCCCCCGGGCAAGACCCGATGGTCTATGAGAGTCACCAAGTTGGGCTTGACCCTTCAGTTTTAAAGTCCTTTCCAGTGTTGGTGTTCCAACCGGAGAACTTCAAAGAAGGTTTGGAGTGTGCAATTTGTCTCTCTGAGATTATTGAAGGGGAAAAGGCCAGGCTTTTTCCGAAATGCAATCATGGGTTTCATGTGGATTGCATTGACATGTGGTTCCATTCGCACTCCACTTTCCCTCTTTGTAGGAACCCTGTTGGTTTTGATTCCACTAAAACAAGTGAAGAGAATGATTTCTCAGGGAACACTGAAACATCATCATCATCATCAATTGAAGAGAACTCAGGTGCTATGCATGGTTTACAGTCTTCAATTTTTCCCACAAATGTGTTGGTTTGGGGGAACCACACACAAGTTAGTTCTTTTGGGGTTTCCTTGGAAGAGGAAGAAGGTAATTCTCAGCAACCAACTTCTCCTCCATCATCTACACCACTTGCTTCTTCTTCAGATGATGACAATGTTAATGGTAGATGTCATGGAATGTTGGGGATTGATATTCCAATTGAGTGCACTTCCTCCTCTCTATCCCCTTCTGGAAGTAGGTGTGTTGAAGATGAGGTGAAATCACCAATGGCTGCTACATTGAGGTCATTTAAAAGGCTTTTGAGCCGAGACAAAAAGTTAAGTCCTTGTAGTCCAAGTTCTGTAGATGTGGTTCAAGCACAGAGCTAG 810 0.4333 MVAMDWGFDSALSLMSYERSLTLRIVFAPGQDPMVYESHQVGLDPSVLKSFPVLVFQPENFKEGLECAICLSEIIEGEKARLFPKCNHGFHVDCIDMWFHSHSTFPLCRNPVGFDSTKTSEENDFSGNTETSSSSSIEENSGAMHGLQSSIFPTNVLVWGNHTQVSSFGVSLEEEEGNSQQPTSPPSSTPLASSSDDDNVNGRCHGMLGIDIPIECTSSSLSPSGSRCVEDEVKSPMAATLRSFKRLLSRDKKLSPCSPSSVDVVQAQS 269
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00784 269 ProSiteProfiles Zinc finger RING-type profile. 67 109 IPR001841 -
Vian9g00784 269 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 38 140 - -
Vian9g00784 269 FunFam RING-H2 finger protein ATL3 35 114 - -
Vian9g00784 269 SUPERFAMILY RING/U-box 47 115 - -
Vian9g00784 269 CDD RING-H2_EL5-like 66 109 - -
Vian9g00784 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 116 IPR013083 -
Vian9g00784 269 SMART ring_2 67 108 IPR001841 -
Vian9g00784 269 MobiDBLite consensus disorder prediction 169 204 - -
Vian9g00784 269 Pfam RING-like zinc finger 66 95 IPR001841 -
Vian9g00784 269 MobiDBLite consensus disorder prediction 169 200 - -
Vian9g00784 269 MobiDBLite consensus disorder prediction 118 142 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vian9g00784 Vian-Chr9 10819254 10820159 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00784 24 252 C3H Transcription Factor Family AT1G53820 42.857 2.45e-49 163
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00784 - - var:108337819 453.366