Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vian9g00784 | ATGGTTGCAATGGATTGGGGCTTTGATTCTGCACTTTCATTGATGAGCTATGAAAGATCCTTGACCTTGCGAATTGTCTTCGCCCCCGGGCAAGACCCGATGGTCTATGAGAGTCACCAAGTTGGGCTTGACCCTTCAGTTTTAAAGTCCTTTCCAGTGTTGGTGTTCCAACCGGAGAACTTCAAAGAAGGTTTGGAGTGTGCAATTTGTCTCTCTGAGATTATTGAAGGGGAAAAGGCCAGGCTTTTTCCGAAATGCAATCATGGGTTTCATGTGGATTGCATTGACATGTGGTTCCATTCGCACTCCACTTTCCCTCTTTGTAGGAACCCTGTTGGTTTTGATTCCACTAAAACAAGTGAAGAGAATGATTTCTCAGGGAACACTGAAACATCATCATCATCATCAATTGAAGAGAACTCAGGTGCTATGCATGGTTTACAGTCTTCAATTTTTCCCACAAATGTGTTGGTTTGGGGGAACCACACACAAGTTAGTTCTTTTGGGGTTTCCTTGGAAGAGGAAGAAGGTAATTCTCAGCAACCAACTTCTCCTCCATCATCTACACCACTTGCTTCTTCTTCAGATGATGACAATGTTAATGGTAGATGTCATGGAATGTTGGGGATTGATATTCCAATTGAGTGCACTTCCTCCTCTCTATCCCCTTCTGGAAGTAGGTGTGTTGAAGATGAGGTGAAATCACCAATGGCTGCTACATTGAGGTCATTTAAAAGGCTTTTGAGCCGAGACAAAAAGTTAAGTCCTTGTAGTCCAAGTTCTGTAGATGTGGTTCAAGCACAGAGCTAG | 810 | 0.4333 | MVAMDWGFDSALSLMSYERSLTLRIVFAPGQDPMVYESHQVGLDPSVLKSFPVLVFQPENFKEGLECAICLSEIIEGEKARLFPKCNHGFHVDCIDMWFHSHSTFPLCRNPVGFDSTKTSEENDFSGNTETSSSSSIEENSGAMHGLQSSIFPTNVLVWGNHTQVSSFGVSLEEEEGNSQQPTSPPSSTPLASSSDDDNVNGRCHGMLGIDIPIECTSSSLSPSGSRCVEDEVKSPMAATLRSFKRLLSRDKKLSPCSPSSVDVVQAQS | 269 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vian9g00784 | 269 | ProSiteProfiles | Zinc finger RING-type profile. | 67 | 109 | IPR001841 | - | |
Vian9g00784 | 269 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL42 | 38 | 140 | - | - | |
Vian9g00784 | 269 | FunFam | RING-H2 finger protein ATL3 | 35 | 114 | - | - | |
Vian9g00784 | 269 | SUPERFAMILY | RING/U-box | 47 | 115 | - | - | |
Vian9g00784 | 269 | CDD | RING-H2_EL5-like | 66 | 109 | - | - | |
Vian9g00784 | 269 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 45 | 116 | IPR013083 | - | |
Vian9g00784 | 269 | SMART | ring_2 | 67 | 108 | IPR001841 | - | |
Vian9g00784 | 269 | MobiDBLite | consensus disorder prediction | 169 | 204 | - | - | |
Vian9g00784 | 269 | Pfam | RING-like zinc finger | 66 | 95 | IPR001841 | - | |
Vian9g00784 | 269 | MobiDBLite | consensus disorder prediction | 169 | 200 | - | - | |
Vian9g00784 | 269 | MobiDBLite | consensus disorder prediction | 118 | 142 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vian9g00784 | Vian-Chr9 | 10819254 | 10820159 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vian9g00784 | 24 | 252 | C3H Transcription Factor Family | AT1G53820 | 42.857 | 2.45e-49 | 163 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vian9g00784 | - | - | var:108337819 | 453.366 |