LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian9g00768	ATGGTGAGAGGAAAGACTCAAATGAAGCGTATAGAGAACGCCACAAGCCGGCAAGTAACTTTCTCGAAGCGGCGAAATGGGTTGCTGAAGAAGGCTTTTGAGCTATCAGTTCTTTGTGATGCTGAGGTTTCTCTTATCATCTTCTCTCCAAGAGGGAAGCTCTATGAATTTTCTAGCACCAGCATACAGCAGTCAATAGAACGTTACCGCAGACATACCAAAAGTGAAACCTCAACTACATTCAGATCAGTTGAACAAAACATGCAGCAACTGAAGCAAGAAGCAGCAAACATGATGAAGAAGATTGAACTTCTTGAAGCTGCAAAACGGAAATTCTTGGGAGAAGGTGTGGGGTCTTGCTCCGTTGAGGAATTGCTACGGATAGAACAACAGTTGGAGAGGAGTTTAAGTAATGTTCGAGCAAGAAAGCTCCAGCTTTTCAGGGACCAAATTGAGCAACTGAAAGAAAAGGAAAAAGCCCTAGTAGATGAAAATGCCAAGCTCACTGAAAATGTAAGGCTAGCTGAGAAGATACAAGAACAAAAGGCCTCTCTCATCAGGTCTAGTAGAAGATTGTTTAATATCTGGCTATGCAAAATTGAAATAAGGATATCAAGAGCTAATAAAAGAAAGTTCGAGGATGATGTTCTTTGGTTTAAGAAAGGTGAATGCATCTCTTCCTGTTCCTGTTCCTCTGAAACAGCAGAGTTGTATGGTGTGTCACCATTATGCATTGAAGACATTACTTATGACATGATGTTGGATGATAGTTATTCTTTGGTGGCTAAATGGTTTGGAGAAGTAAGAGATAGTAAAGGAAATCATCTGCTTCATTTTCTCATTTTGCTCCGAGAACAAGCAAAGACTAATGAAAGTTCTTGA	882	0.4025	MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPRGKLYEFSSTSIQQSIERYRRHTKSETSTTFRSVEQNMQQLKQEAANMMKKIELLEAAKRKFLGEGVGSCSVEELLRIEQQLERSLSNVRARKLQLFRDQIEQLKEKEKALVDENAKLTENVRLAEKIQEQKASLIRSSRRLFNIWLCKIEIRISRANKRKFEDDVLWFKKGECISSCSCSSETAELYGVSPLCIEDITYDMMLDDSYSLVAKWFGEVRDSKGNHLLHFLILLREQAKTNESS	293

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian9g00768	293	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Vian9g00768	293	Coils	Coil	144	171	-	-
	Vian9g00768	293	FunFam	MADS-box protein SOC1	14	96	-	-
	Vian9g00768	293	ProSiteProfiles	K-box domain profile.	88	184	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Vian9g00768	293	CDD	MADS_MEF2_like	3	75	IPR033896	GO:0000977\|GO:0045944
	Vian9g00768	293	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Vian9g00768	293	Pfam	K-box region	85	172	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Vian9g00768	293	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Vian9g00768	293	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Vian9g00768	293	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Vian9g00768	293	Gene3D	-	14	102	IPR036879	GO:0003677\|GO:0046983
	Vian9g00768	293	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Vian9g00768	293	Coils	Coil	122	142	-	-
	Vian9g00768	293	Coils	Coil	74	111	-	-
	Vian9g00768	293	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	3	166	-	-
	Vian9g00768	293	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Vian9g00768	293	SUPERFAMILY	SRF-like	3	89	IPR036879	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian9g00768	Vian-Chr9	10411323	10437767	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian9g00768	1	159	MADS-box Gene Family	AT2G45660	76.101	1.04e-81	242

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Vian9g00768		K-box	6.3e-25	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian9g00768	-		-	gmx:100807963	297.745

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vian9g00768	9	10411323	10437767	Vian9g00768	9	10411323	10437767	ECH
	Vian2g00714	2	9814105	9831241	Vian9g00768	9	10411323	10437767	PCT