Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00745 ATGGGTATTGATACCAATTTGGTGACTACTATCATTGGGTTTGGGTTGAGTGCAACGTTCATTGTCTTCGTTTGCACAAGAATAATTTGTGGAAGACTACACGAACGAGTTGGAGTACGAACAGTATATGAAATCGAACCAAGAACAGACATAGAACGGTCAGAGTTTCATGGTAATGAGCCTGAACCTGCTTTTGTTGCTGCAATCCCCACTTTGAGTTTCAACCATGAAGCCTTCGTTTCAACGGGAAGCACACAGTGTGTGATATGTTTGGCAGAGTACAAAGAAAAAGAAGTATTGCGCATCATACCAAAATGTGGCCACACTTTTCACCTTTCTTGCATTGATATGTGGCTGAGAAAACAATCAACTTGTCCAGTGTGTCGTTTGTCACTGCAAAATGCTTCTGAATCAAAACATGTGAGACATGTAACATTTACCATAAGACATTCGCTGGATGAGTCCAATGATATTTCAGAAAGGAACATAGACAGTGAGAGACAGGTTGAAGCTAATTCTAGGATATCTCTACAATCAACTTTGGGAGAGATAGGATGTTAG 561 0.4029 MGIDTNLVTTIIGFGLSATFIVFVCTRIICGRLHERVGVRTVYEIEPRTDIERSEFHGNEPEPAFVAAIPTLSFNHEAFVSTGSTQCVICLAEYKEKEVLRIIPKCGHTFHLSCIDMWLRKQSTCPVCRLSLQNASESKHVRHVTFTIRHSLDESNDISERNIDSERQVEANSRISLQSTLGEIGC 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00745 186 SMART ring_2 87 128 IPR001841 -
Vian9g00745 186 CDD RING-H2_EL5-like 86 129 - -
Vian9g00745 186 PANTHER OS11G0150450 PROTEIN 2 162 - -
Vian9g00745 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 139 IPR013083 -
Vian9g00745 186 Pfam Ring finger domain 86 129 IPR001841 -
Vian9g00745 186 SUPERFAMILY RING/U-box 86 135 - -
Vian9g00745 186 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00745 Vian-Chr9 9895782 9896817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00745 77 182 C3H Transcription Factor Family AT4G10150 35.385 9.12e-19 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00745 - - gmx:100800505 294.278