Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00743 ATGACTTTTGCTCAGTGTTCAATTTCCAACATGTTTCAACATAGAAACCATGATGATTTCGCAACTGTGGCAGGGTTTGCTTTCATTTACATGGAAGATGAACGAGATGCTGAGTATGCAATCAGAAGGCTTGATAGAACTGAATTTGGTAGAAAGGGACGTCGGATTCGTGTTGAGTGGACTAAGCAAGAACGTGACAGTAGAAGGTCAGGTGGTGATTCCAGAAAACCTTCATCTAATTCAAGGCCATCCAAAACATTGTTTGTTATTAATTTTGATCCAGTTCACGCTAGGACAAAGGATCTGGAGAGACATTTTGACCCTTATGGGAAAATTTTAAATATAAGGATCAGAAGGAATTTTGCTTTTATTCAGTATGAATCACAGGAGGATGCTACTAGAGCTTTGGAGGCGACCAACCTGAGCAAATTTATGGACCGTGTTATCACGGTGGAGTATGCCATAAGAGATGATGATGACAGAGATAGAAGGAACGGATACAGTCCTGAAAGAAGAGCTCATGACTCGCCTGATGGGAGATATGGTCGTGGTAGATCGCCCAGTCCATATCGTAGAGGTAGGGGTAGCCCAGATTATGGTCATGGATCAAATCCATCTTCCCGACCAGAAACAAAAGGAAGCCCCAAGTATGAACGAGCTGAAAGTCCGATAAATGGGAGATATGATAGCCGGTCTCCACCACCCCGAGAAAGGTCACGTTCTTGA 726 0.4325 MTFAQCSISNMFQHRNHDDFATVAGFAFIYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRSGGDSRKPSSNSRPSKTLFVINFDPVHARTKDLERHFDPYGKILNIRIRRNFAFIQYESQEDATRALEATNLSKFMDRVITVEYAIRDDDDRDRRNGYSPERRAHDSPDGRYGRGRSPSPYRRGRGSPDYGHGSNPSSRPETKGSPKYERAESPINGRYDSRSPPPRERSRS 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00743 241 MobiDBLite consensus disorder prediction 159 181 - -
Vian9g00743 241 FunFam serine/arginine-rich splicing factor RS41 isoform X2 77 208 - -
Vian9g00743 241 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 22 99 - -
Vian9g00743 241 SUPERFAMILY RNA-binding domain, RBD 24 160 IPR035979 GO:0003676
Vian9g00743 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 24 52 IPR000504 GO:0003723
Vian9g00743 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 87 149 IPR000504 GO:0003723
Vian9g00743 241 Gene3D - 14 77 IPR012677 -
Vian9g00743 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 63 IPR000504 GO:0003723
Vian9g00743 241 MobiDBLite consensus disorder prediction 62 85 - -
Vian9g00743 241 Gene3D - 78 168 IPR012677 -
Vian9g00743 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 85 156 IPR000504 GO:0003723
Vian9g00743 241 MobiDBLite consensus disorder prediction 159 241 - -
Vian9g00743 241 MobiDBLite consensus disorder prediction 212 241 - -
Vian9g00743 241 SMART rrm1_1 86 152 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00743 Vian-Chr9 9832923 9834323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00743 25 177 Eukaryotic Initiation Factors Gene Family AT1G49760 25.767 2.15e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00743 K12893 - gmx:100797778 357.066