Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00742 ATGGTGGAAGATAATAAAGCTGCAGTAGCAGTTGATGATGCCTGTTCAAGAGAAAACTTGTTGTTGCATGCACAGGAACTTGTTCCTGTGGCTCTTGCTAAGGCGAAAGAGGTTAAGGTGTTCCCTGGTAGGTGGAAGATGATCATTTCAAAATTGGAGCAGATTCCCTCCTGTTTATCGGATTTGTCTAGCCACCCTTGTTTCTCCAAGAATGCTCTATGCAAGGAGCAATTGCAGGCTGTGTCAAAGACGCTTAAAGAAACCAAAGAATTGGCTGAGTTGTGTGTGATGGAGAAGTACGAGGGTAAGCTTAGGATGCAGAGTGATCTTGATGCATTAACTGGGAAACTGGATTTGAATTTAAAGGATTGTGGTCTCTTGATCAAGACCGGTGTGCTCGGTGAAGCTACTTTGCCATTAACCGTGTTAGGTTCTATGGCAGAATCAGATATTGCAACACACAACAATATAAGAGAACTACTAGCGCGCCTTCAGATTGGTCACTTGGAAGCAAAGCACAAAGCCTTAGACAGACTCTATGATGTTATGAAAGAGGATGAAAAGAATGTTTTGGCTGTTCTTGGCAGGAGGAATGTTGCTGCTTTGGTTCAATTGCTCACAGCAACATCTCCAAGGATAAGGGAGAAGACGGTTACTGTTATATGCTCTCTGGTGGAATCTGGGAGCTGTGAAAAGTGGCTAGTTTCTGAAGGAGTTCTTCCACCTCTTATTAGACTTGTTGAATCTGGTAGTGCTGTCAGTAAAGAGAAGGCTATAGTATCTCTTCAGAGACTGTCAATGTCAGCAGAAACAACTCGTGCAATTGTTGGACACGGTGGTGTTCGGCCATTGATCGAGCTTTGTGAGAGTGGAGATTCTGTGTCACAGGCTGCTGCTGCCTGCACTTTGACAAACATATCAGCTGTTCCTGAGGTGAGACAGGCTTTGGCTGAAGAAGGTATTGTAAGTGTTATGATCAATCTTCTTAGTTGTGGAATTTTGTTAGGTTCCAAAGAGTATGCAGCTGAGTGCTTGCAGAATCTCACTTCAAGCAACGAGCATTTGAGAAAGTGTGTTATATCAGAAGGTGGTGTTAGAAGTCTTCTGACCTATCTAGATGGTCCACTTCCTCAAGAATCCGCAGTTGGAGCATTGAGGAATCTGGTTGGATCAGTTTCTGAGGAAACTTTGGTTTCTCTTGGTTTGCTTCCTTGTTTGGTTCACGTTCTGAAGTCTGGATCTTTGGGTGCTCAACAAGCTGCAGCTTCTGTCATTTGCCGAGTTTGCAGCTCAATGGAGATGAAGAAAATGGTGGGTGAAGCTGGGTGCATCCCTCTTCTTATAAAGATGCTTGAGGCTAAAACAAATACTGCTAGAGAGATTGCTGCTCAAGCAATTTCAAGCCTCATGGTTCTGTCTCAAAATCGGAGAGAGGTTAAGAAAGATGATAAAAGTGTTCCAAATCTTGTCCAGTTGCTTGATCCAAGCTCTCAGAACACTGCCAAAAAGTATGCAGTTTCATGCCTTGGATCACTTTCTCCATGTAAGAAGTGTAAGAAACTGATGATTTCGTATGGAGCAATCGGGTATCTGAAGAAGCTTACAGAGATGGACATTCCAGGAGCTAAAAAGCTTCTTGAGAGGTTGGAAAGAGGGAAATTGAGAAGCTTGTTCAGCAGAAAGTAG 1686 0.4336 MVEDNKAAVAVDDACSRENLLLHAQELVPVALAKAKEVKVFPGRWKMIISKLEQIPSCLSDLSSHPCFSKNALCKEQLQAVSKTLKETKELAELCVMEKYEGKLRMQSDLDALTGKLDLNLKDCGLLIKTGVLGEATLPLTVLGSMAESDIATHNNIRELLARLQIGHLEAKHKALDRLYDVMKEDEKNVLAVLGRRNVAALVQLLTATSPRIREKTVTVICSLVESGSCEKWLVSEGVLPPLIRLVESGSAVSKEKAIVSLQRLSMSAETTRAIVGHGGVRPLIELCESGDSVSQAAAACTLTNISAVPEVRQALAEEGIVSVMINLLSCGILLGSKEYAAECLQNLTSSNEHLRKCVISEGGVRSLLTYLDGPLPQESAVGALRNLVGSVSEETLVSLGLLPCLVHVLKSGSLGAQQAAASVICRVCSSMEMKKMVGEAGCIPLLIKMLEAKTNTAREIAAQAISSLMVLSQNRREVKKDDKSVPNLVQLLDPSSQNTAKKYAVSCLGSLSPCKKCKKLMISYGAIGYLKKLTEMDIPGAKKLLERLERGKLRSLFSRK 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00742 561 SMART arm_5 352 390 IPR000225 GO:0005515
Vian9g00742 561 SMART arm_5 391 430 IPR000225 GO:0005515
Vian9g00742 561 SMART arm_5 186 226 IPR000225 GO:0005515
Vian9g00742 561 SMART arm_5 309 350 IPR000225 GO:0005515
Vian9g00742 561 SMART arm_5 472 514 IPR000225 GO:0005515
Vian9g00742 561 SMART arm_5 268 308 IPR000225 GO:0005515
Vian9g00742 561 SMART arm_5 431 471 IPR000225 GO:0005515
Vian9g00742 561 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 238 280 IPR000225 GO:0005515
Vian9g00742 561 Gene3D - 153 390 IPR011989 -
Vian9g00742 561 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 16 559 - -
Vian9g00742 561 Gene3D - 391 540 IPR011989 -
Vian9g00742 561 SUPERFAMILY ARM repeat 157 538 IPR016024 -
Vian9g00742 561 Pfam Armadillo/beta-catenin-like repeat 270 308 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00742 Vian-Chr9 9821749 9823434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00742 401 539 U-box Gene Family AT3G54790 28.777 3.41e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00742 - - var:108346326 1060.44