Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00716 ATGTCTCGGTGCAAAAGGAGAAAATTTATAACAGAGCTTCGAAGAATAACATCAGCAGAGAACAATGAAGCTTGTTGGAGTCGAAAAGGTTGTGCTGTCACACGTAGTGGAGTCGTGAAGGATATTGATTTTAAGGTGGAATGTTCTCGCGATGGCATTGCTTGCATGACGGTGAAACTGAACTCGTGTCGGGGTGACTATCTGTTCACGATGGTCTCTTGCGATAACGGTGAAGTGCGAAGGAACGTTGCGATTTGGCTGATTAATGTTGTTGGCATCGTTGTTGCAGAGTCTTCGAGAGAGTCGTCGAAAGGTGCTGAAGAAGATGGAGCTTATATGGATGGAATGGTGAGGGAATCTGAGCCCTCTCCATTTGCAATGGCTTTCCCTCCTTACCGAAGATCCCATTTGCGTAGCAACACTTACCATGCTCTTGTTCACCTACTCTCTCACTTTGCTGAGTACAACTCTTCACATGAAACTTCAATCCAACCCTTCAACATTCCGGATGATGGCATTGGTAGAATGGATAGAGAGATCATTGAGGGGGTTGGAGACAAGGATACGGATTTTCCTTCCAACAAGATTGTCCTAGATGATATAGAACATATGCTGGAAATAGAGGACATGCCTACCCAAGTAAATGGTGATTTAATTCCCATGAACACTGAATTTGATGAGAAACATAATGATGGCCGTGAAGTTGGGTTGATGGACTCTCAAGTAGACATGGAAGAGGGAGAAATTTCTGGAGACTTGGGAAAGGATGGCAATTCATGTGATGTTCCGTCTGCAGATGCTTTAATTTTACCGCAGAAGCAGGTAGATGACCTTCAGGAGCCTAAAAGGAGAAAGATTAAGGAAGATAAAATGAAGGTATTCTTTAAATTAAATGTTCAACCAGCCTTTAAAAGGAATAAGCGTGGTGGAAAGAAAGACAAAAAAAAGTTTGTACAGAAACCAAAAGCTGTCTCACATTGTCGGCATTATATTATGGGAAGATGCTATGAGGGTGACAAATGTCAGTTTTCACATGATGTGGTGCCTCGAACAAAATCCAAGCCATGTGGTCACTTTGCTCATAACTCTTGCATGAAAGGGAATGATTGCCCATTTGATCACGAACTCTCAAAGTATCCTTGTAACAATATTCTATCCCAAGGCTTTTGTAGAAGAGGTGAATCTTGCTTGTTTTCACACCAGGTATCCAAAGAAGATATCCCTTCAAATATCCCTACCCCTTCAAATATGCGCAGACCAGTGTTGTCTACTCTTCAGTCAGGAAATGCAAATTCCAGTACACCAGTTAGCAATAATCATGGCTCTGGTACTATGCAGCAAAATCTCTTAACTCATTCTTCTGGAATTCATTCTCGGGTGAATGTTGAACATAAGGCAACAAACACTGCACAAAAACAGCCTACACCACCTAAAGGAATCAGTTTCATCAATCTTGCAAAATTCACGCCCAGCCCTTCTGCACTAAAACAAGGCACAGTAACAATCAAGGAAAGTCCTTTACAAACAGGGATGCATGAAGAACAACGTGCATTTAACAAAAGTCAAAACAAGGTGGAGATTGCAAAGAAACTGCCATCTGTGACACCTAAAGGAGTAAACTTTCTTTCTTTTGGCAAAGGCTCTGTCTCTGGCTCTAAAACTCATATTCATCCTAATTTGAGTACAGAAAATGGTTTCAATTTGCCTCGGTTACTCAATTTTGGTTTGCCTGAGCAGATAAAGAAGGATGTCCATGACAAACCTAGTGACAGGACACAACAAAGTGTATCACTGTCTGACATATTCTTAAATGAGATTTTAGGAAAAAATCAATCTGTGTCAGAGGGAGTAAAATCCAAGTTTCCAGATAAAACCTCTCATGATCAGAGGACTCTGCAAAAAAGTTCTGTTGAAGTTTCAAACCATGCAGCCCTTGGTGATTGGAACCAAGGCTATGATAGAAGCAACTTGGTGCTGGCTGTTTTGGAAGTTATAAACACTGGATCAATGCTCAGAGTAACCTGCTCCTGCCAGTGGATTAAAGTTTGGACTGAAGCTGCCAATCTAGTAGCTCAACTGAACTTGGAGCAGGCTGGATATGTGATTTAA 2109 0.4144 MSRCKRRKFITELRRITSAENNEACWSRKGCAVTRSGVVKDIDFKVECSRDGIACMTVKLNSCRGDYLFTMVSCDNGEVRRNVAIWLINVVGIVVAESSRESSKGAEEDGAYMDGMVRESEPSPFAMAFPPYRRSHLRSNTYHALVHLLSHFAEYNSSHETSIQPFNIPDDGIGRMDREIIEGVGDKDTDFPSNKIVLDDIEHMLEIEDMPTQVNGDLIPMNTEFDEKHNDGREVGLMDSQVDMEEGEISGDLGKDGNSCDVPSADALILPQKQVDDLQEPKRRKIKEDKMKVFFKLNVQPAFKRNKRGGKKDKKKFVQKPKAVSHCRHYIMGRCYEGDKCQFSHDVVPRTKSKPCGHFAHNSCMKGNDCPFDHELSKYPCNNILSQGFCRRGESCLFSHQVSKEDIPSNIPTPSNMRRPVLSTLQSGNANSSTPVSNNHGSGTMQQNLLTHSSGIHSRVNVEHKATNTAQKQPTPPKGISFINLAKFTPSPSALKQGTVTIKESPLQTGMHEEQRAFNKSQNKVEIAKKLPSVTPKGVNFLSFGKGSVSGSKTHIHPNLSTENGFNLPRLLNFGLPEQIKKDVHDKPSDRTQQSVSLSDIFLNEILGKNQSVSEGVKSKFPDKTSHDQRTLQKSSVEVSNHAALGDWNQGYDRSNLVLAVLEVINTGSMLRVTCSCQWIKVWTEAANLVAQLNLEQAGYVI 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00716 702 ProSiteProfiles Zinc finger C3H1-type profile. 350 377 IPR000571 GO:0046872
Vian9g00716 702 Gene3D - 310 379 - -
Vian9g00716 702 SUPERFAMILY CCCH zinc finger 322 346 IPR036855 GO:0046872
Vian9g00716 702 ProSiteProfiles Zinc finger C3H1-type profile. 321 348 IPR000571 GO:0046872
Vian9g00716 702 SMART c3hfinal6 378 402 IPR000571 GO:0046872
Vian9g00716 702 SMART c3hfinal6 350 376 IPR000571 GO:0046872
Vian9g00716 702 SMART c3hfinal6 320 347 IPR000571 GO:0046872
Vian9g00716 702 ProSiteProfiles Zinc finger C3H1-type profile. 380 403 IPR000571 GO:0046872
Vian9g00716 702 Pfam CCCH-type zinc finger 326 346 IPR041367 -
Vian9g00716 702 MobiDBLite consensus disorder prediction 617 636 - -
Vian9g00716 702 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 302 642 IPR045124 GO:0003723|GO:0045892
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vian9g00716 zf-CCCH_4 1.5e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00716 - - vun:114165961 583.178