Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00713 ATGAATGTAAATTCTTTTGGGAAGTTAATTAGAGGTCATCTTAGTCGCTTCAACACCCAAATAGGACGTTGTGCGCCCCATTCCAAGGGCCAGGCGTTGAGCGCCAGCCTCCTGGTGCTGAGTGCCATAAAATATAAGCTAGGGCAACAACGTCACCCTGTATGTTCCTATTATGTTGTTTTAAGTTTGGAAAGTTGGTTCCATGTTGGAACTTCTTGGTGTGGTTCAAGTGTTATTAGAATTAATGCAGGAGGTCTTAGTCTAGGTGCTTCCACTATAGCCTACGATGCGGAACAGTATAATGCCAAATCTGTTTTCTGCTTGCCGCCGTTGAAGGCTCGTAGCCGTCGGAGGTTCGTCGCCGTTGAAGACTCACCGCTATCGAAGGCTTTTCCAAACTGGGGTTCTTTTGTTTTTTTTGCTGTTCGTGTGGTAAAAGCTGAAGCGGAAGCGCAACCTGGCAAAAGCTTGAGATTTAAGCATTTGAGATTGATGAGGCGGAAAGAAGAAGACGAAAAAGAAGGAGGCTACGGATGGCTCGAAAAACCTGGAAAGTATTCTCCTAAAGGAGTTTTGAGGGCTCTCATTATTGCTCCAACTAGAGAACTTGCACTTCAGGTCACTGATCATCTGAAAGCTGTTGCGAAGTATATTAATGTTAGGGTGACCCCTATAGTTGGGGGGATTTTAGCAGAAAAGCAGGAGAGACTTTTAAAAGCAAAGCCTGAGATTGTTGTCGGAACTCCAGGGAGGTTATGGGAACTTATTACTTTAGAAAACTCATGCCTGTATTTACATTCACTCTCTTTCTTTGTGCTTGATGAGGCCGATCGGATGGTACAAAGTGGTCATTTTAAGGAGTTGCAGTCTATAATTGATATGCTTCCCATGTCCAACATCTGTACTGAAGATAATTCTAAAAATGTACAAAAAGGTTGTGTTACAGTTTCTAGTTATCAAAGAAAGAAAAGGCAAACACTTGTTTTTTCAGCTACTGTTGCACTGTCTGCTGATTTTCGCAAGAAGCTAAAACGTGGCTCAGGTCAAAAAAAGCAATCATCAACAGATGGATTGAATTCTATCGAAACTCTTTCTGAGCGTGCAGGAATGAGATCCAATGCTGCAATTATTGATCTTACTAATCCATCTATATTAGCAGCTAAGCTTGAGGAGTCATTTATTGAATGCAGAGAAGAAGATAAAGATGCATATTTGTATTATATTTTGACTGTCCATGGACAAGGTCGCACCATAGTTTTCTGCACGTCAATTGCAGCTTTACGTCATATTTCTTCCATATTACGGATTCTTGGAATCGATGTTTGGACTCTTCATGCTCAAATGCAGCAGCGAGCACGATTGAAGGCCAAGCCTGATCAGATTCAACAGAGGGTGAAGGATCCATGGTCTGGGAATCTGGTGAAGAAGGAGCTGAGTCTCGAGGATCTTCAGGCAAGGGAGGAGGGAGCTCAGGCGAGACGACTGGTGGAGACGCGGTGTCGCTCTGACACCGGGAGGGTGGCGCGTGAGATGCACGCGCCTGAGAGTCGCCGGAGAAAGGCCATTGATCGCTTTCGGGAAAATGAAAATGGCATACTTGTTGCTACAGATGTTGCTGCCAGGGGTCTTGATATTCCTGGTGTTAGAACTGTTGTCCATTATCAGCTTCCACATTCAGCAGAGGTTTATGTTCATAGAAGTGGAAGAACAGCCAGAGCTTCCGCCGAAGGTTGTAGCATTGCTTTAATATCACCAAAAGATACGTCCAAGTTTGCTTCACTGTGCAAATCATTTTCTAAGGATAACTTTCAGCGGTTTCCTTTAGAGAACTCTTACATGCCAGAGGTCCTAAAAAGACTGTCTCTTGCACGACAAATAGACAAGATAACAAGGAAGGATTCCCAGGTAAAGGCTGAGAAAAACTGGTTTGATCGGAATGCTAGCTCAGTTGAATTAATTACTGAAAATTATGACAGTGAAGAGGAGCAAGTGAACAAACATAAGGAAATAAAGGCCAGCTCTAGACAATTGAAGAAATTGCAGGAGGAGCTCAAAATGCTGATTTCTCGCCCATTACAATCAAAATCATTTTCACATCGGTATTTAGCAGGGTCTGGTGTCACACCCCTCATGCAGGAGCAATTGCAACAGTTAGCAAGGCAAAAATTAAGTGATCACCAGGGTTCTAGTCTAGGCAAAAAGGGAAAATTGGTTGTGATTGGTCAAGATTGCATGGATGCACTTCAAGCTCTTCGAAGTGGTGGTGAAGAGGTGCGAATGGATATTAAGGAGTTGGCCGGAAAACAGAGAAATATAGAGAATTTAAAAAGAAAGCGAAAAGAGGAGAAAAAACGTTTGCGTGATCAGCGTAGAAAGCAGAAGAAAAAGCTAAAATACGGGGATGAATAG 2409 0.4301 MNVNSFGKLIRGHLSRFNTQIGRCAPHSKGQALSASLLVLSAIKYKLGQQRHPVCSYYVVLSLESWFHVGTSWCGSSVIRINAGGLSLGASTIAYDAEQYNAKSVFCLPPLKARSRRRFVAVEDSPLSKAFPNWGSFVFFAVRVVKAEAEAQPGKSLRFKHLRLMRRKEEDEKEGGYGWLEKPGKYSPKGVLRALIIAPTRELALQVTDHLKAVAKYINVRVTPIVGGILAEKQERLLKAKPEIVVGTPGRLWELITLENSCLYLHSLSFFVLDEADRMVQSGHFKELQSIIDMLPMSNICTEDNSKNVQKGCVTVSSYQRKKRQTLVFSATVALSADFRKKLKRGSGQKKQSSTDGLNSIETLSERAGMRSNAAIIDLTNPSILAAKLEESFIECREEDKDAYLYYILTVHGQGRTIVFCTSIAALRHISSILRILGIDVWTLHAQMQQRARLKAKPDQIQQRVKDPWSGNLVKKELSLEDLQAREEGAQARRLVETRCRSDTGRVAREMHAPESRRRKAIDRFRENENGILVATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARASAEGCSIALISPKDTSKFASLCKSFSKDNFQRFPLENSYMPEVLKRLSLARQIDKITRKDSQVKAEKNWFDRNASSVELITENYDSEEEQVNKHKEIKASSRQLKKLQEELKMLISRPLQSKSFSHRYLAGSGVTPLMQEQLQQLARQKLSDHQGSSLGKKGKLVVIGQDCMDALQALRSGGEEVRMDIKELAGKQRNIENLKRKRKEEKKRLRDQRRKQKKKLKYGDE 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00713 802 Coils Coil 758 796 - -
Vian9g00713 802 CDD SF2_C_DEAD 389 583 - -
Vian9g00713 802 PANTHER RNA HELICASE 168 745 - -
Vian9g00713 802 Gene3D - 487 694 IPR027417 -
Vian9g00713 802 Pfam Helicase conserved C-terminal domain 513 573 IPR001650 -
Vian9g00713 802 Gene3D - 384 467 IPR027417 -
Vian9g00713 802 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 588 IPR027417 -
Vian9g00713 802 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 388 614 IPR001650 -
Vian9g00713 802 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 193 351 IPR014001 -
Vian9g00713 802 SMART helicmild6 494 574 IPR001650 -
Vian9g00713 802 MobiDBLite consensus disorder prediction 771 802 - -
Vian9g00713 802 Coils Coil 473 493 - -
Vian9g00713 802 SMART ultradead3 135 353 IPR014001 -
Vian9g00713 802 Coils Coil 650 690 - -
Vian9g00713 802 Pfam DEAD/DEAH box helicase 184 334 IPR011545 GO:0003676|GO:0005524
Vian9g00713 802 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 272 280 IPR000629 -
Vian9g00713 802 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 391 594 IPR027417 -
Vian9g00713 802 MobiDBLite consensus disorder prediction 780 794 - -
Vian9g00713 802 Gene3D - 143 346 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00713 Vian-Chr9 9257573 9279675 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00713 448 587 Eukaryotic Initiation Factors Gene Family AT3G13920 27.451 1.32e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00713 K14805 - sind:105171824 678.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00713 9 9257573 9279675 Vian9g00713 9 9257573 9279675 ECH