Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00701 ATGTCTTTCACTGGAACTCTAGACAAATGCAATGCATGCGACAAGACTGTTTATGTGGTTGACCTGTTAACTCTTGAAGGCACTCCTTACCATAAGAACTGCTTCAAATGCAGTCACTGCAAGGGATGTCTCACGATGAGCACATACTCCTCAATGGATGGAGTTCTCTACTGCAAGACACATTTTGAACAACTCTTCAAGGAATCTGGCAATTTCAGCAAGAACTTCGCAAAGTCGGCTGAGAAACAAAATGAAATAAACAGAACTCCCAGCAAGCTATCTTCAATGTTCAGTGGAACCCTGGACAAATGTGCAGTATGCGCTAAAACAGTCTATCCTCTTGAAAAGGTAACACTGGAAGGAGAATGCTACCACAAGACTTGTTTCAGGTGTGCTCATGCAGGGTGCCCTCTGACACATTCAAGCTATGCTGCCCTTGATGGTGTCCTCTACTGCAGAGTCCACTTTCAACAACTGTTCATGGAGAAAGGGAACTACAGCCATGTCCTCCAAGCTGCTGCACACAAGAGGACTGGTTCTTCCACACCTCCTGAGCCTCTATTTGAGGAGCCATCACATCCACCAGTAGCATCTGAGGAACCTAAAGTAGTGGAAGATGAAGAAAAAAATGAAGAAAAAAGTGAAGAAAAAAGTGAAGAAAAAGAAGAAGAAGAAGAAAGCTCTTGA 687 0.4367 MSFTGTLDKCNACDKTVYVVDLLTLEGTPYHKNCFKCSHCKGCLTMSTYSSMDGVLYCKTHFEQLFKESGNFSKNFAKSAEKQNEINRTPSKLSSMFSGTLDKCAVCAKTVYPLEKVTLEGECYHKTCFRCAHAGCPLTHSSYAALDGVLYCRVHFQQLFMEKGNYSHVLQAAAHKRTGSSTPPEPLFEEPSHPPVASEEPKVVEDEEKNEEKSEEKSEEKEEEEESS 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00701 228 Pfam LIM domain 104 159 IPR001781 -
Vian9g00701 228 Pfam LIM domain 10 65 IPR001781 -
Vian9g00701 228 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Vian9g00701 228 SMART lim_4 103 155 IPR001781 -
Vian9g00701 228 SMART lim_4 9 61 IPR001781 -
Vian9g00701 228 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 96 129 - -
Vian9g00701 228 FunFam LIM domain and actin-binding 1 4 74 - -
Vian9g00701 228 ProSiteProfiles LIM domain profile. 102 162 IPR001781 -
Vian9g00701 228 FunFam LIM domain and actin-binding 1 98 168 - -
Vian9g00701 228 PANTHER OS06G0237300 PROTEIN 6 83 - -
Vian9g00701 228 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 130 169 - -
Vian9g00701 228 Gene3D Cysteine Rich Protein 5 72 - -
Vian9g00701 228 Gene3D Cysteine Rich Protein 100 168 - -
Vian9g00701 228 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Vian9g00701 228 Coils Coil 203 227 - -
Vian9g00701 228 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Vian9g00701 228 MobiDBLite consensus disorder prediction 175 228 - -
Vian9g00701 228 MobiDBLite consensus disorder prediction 195 216 - -
Vian9g00701 228 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00701 Vian-Chr9 8977588 8979240 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Vian9g00701 LIM 5.7e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00701 - K09377 gmx:100800234 379.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00701 9 8977588 8979240 Vian9g00701 9 8977588 8979240 ECH