Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00687 ATGGATCGAGGGGACCAAATGTTATCTGGCTCTGCATCTTACTATATGCAGAGAGGAATACCTGGTGCTGGAACTCAATCTGAACTGCACAACTCGCCTAATATTAGATCATTGTCTAATCCTAATTTACCATTTCAATCAAGCATTGGTGGTGGTGGTACCATTGGATCCACATTACCGTTGGAGTCTACAGGAATTTCATCTCCATGTGTCAATGTGAGTGCTCCTTCTGGTGCTGTGCCAGGGGAATCTGCCAAAAGGAAGAGAGGAAGGCCTCGAAAATACGGGCCGGACGGAACTGTGTCGTTGGCATTGACTCCAACACCAGCAAGTCATCCTGGAGCCCTGGCACAAGGCCAGAAACGAGGTAGAGGGCGCCCACCAGGATCAGGGAAGAAACAGCAGTTGGCTTCTCTTGGCGAACTGATGTCTGGTTCAGCTGGGATGGGTTTCACTCCTCATATCATTACCATAGCAGTTGGAGAGGACGTTGCCACAAAAATCATGGCATTTTCTCAGCAGGGTCCAAGAGCTATATGTATTTTGTCAGCCAATGGTGCTGTGTCTACTGTGACTCTTCGCCAGCCTTCAACATCAGGTGGCACAGTCACATATGAGGGGCGTTTTGAGATATTGTGCCTGTCAGGCTCTTACTTGGTTGCCGATGGTGGTGGCTCCCGCAATCGAACTGGTGGATTAAGTGTTTCCCTTGCAAGTCCTGATGGCCGTGTCCTTGGCGGAGGAGTTGGTGGAGTGCTTATTGCTGCAAGTCCAGTTCAGGTGATAGTTGGAAGCTTTACATGGGGTGGATCAAAGACAAAGATCAAGAAAAAAGAACCTTCAGAAGTGGCAGAAGTTGCTATAGAGACTGATCATCAGACAGTTCATAATCCCATTGCAATGAATAGCCTCTCGCCAAATCAAAATCTTACTCCAACCTCATCTTTAAGTCCGTGGCCAGCATCACGATCATTGGATATGCGCAACTCTCATATTGACATTGATTTAATGCGCGGGTGA 1020 0.4784 MDRGDQMLSGSASYYMQRGIPGAGTQSELHNSPNIRSLSNPNLPFQSSIGGGGTIGSTLPLESTGISSPCVNVSAPSGAVPGESAKRKRGRPRKYGPDGTVSLALTPTPASHPGALAQGQKRGRGRPPGSGKKQQLASLGELMSGSAGMGFTPHIITIAVGEDVATKIMAFSQQGPRAICILSANGAVSTVTLRQPSTSGGTVTYEGRFEILCLSGSYLVADGGGSRNRTGGLSVSLASPDGRVLGGGVGGVLIAASPVQVIVGSFTWGGSKTKIKKKEPSEVAEVAIETDHQTVHNPIAMNSLSPNQNLTPTSSLSPWPASRSLDMRNSHIDIDLMRG 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00687 339 FunFam AT-hook motif nuclear-localized protein 1-like 153 284 - -
Vian9g00687 339 MobiDBLite consensus disorder prediction 70 136 - -
Vian9g00687 339 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 65 313 IPR039605 GO:0003680
Vian9g00687 339 Gene3D - 153 296 - -
Vian9g00687 339 ProSiteProfiles PPC domain profile profile. 147 289 IPR005175 -
Vian9g00687 339 SMART AT_hook_2 121 133 IPR017956 GO:0003677
Vian9g00687 339 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Vian9g00687 339 MobiDBLite consensus disorder prediction 24 56 - -
Vian9g00687 339 SUPERFAMILY AF0104/ALDC/Ptd012-like 151 269 - -
Vian9g00687 339 CDD DUF296 152 266 IPR005175 -
Vian9g00687 339 MobiDBLite consensus disorder prediction 301 324 - -
Vian9g00687 339 Pfam Plants and Prokaryotes Conserved (PCC) domain 153 267 IPR005175 -
Vian9g00687 339 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00687 Vian-Chr9 8733496 8738532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00687 1 339 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 50.833 1.36e-88 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00687 - - gmx:100799791 581.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00687 9 8733496 8738532 Vian9g00687 9 8733496 8738532 ECH
Vian2g00642 2 8345649 8349972 Vian9g00687 9 8733496 8738532 PCT