Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00665 ATGTTAAAGGCGTTTGTTAAGGCTCAGAAATCAAGGGCCTACTTCAAGAGATATCAAGTGAAGTTCAAGAGAAGAAGAGAGGGAAAAACCGATTACCGAGCCAGGATTCGGTTGATTAACCAGGATAAGAACAAGTACAACACACCAAAGTATCGCTTTGTGACTAACAAGGACATCATTGCCCAAATAACATCTGCTACCATTGCTGGTGATAATGTTCTTGCTGCAGCATATGCACATGAGCTGCCACGCTATGGTCTCGAAGTGGGCCTTACAAACTATGCCGCAGCTTATTGCACTGGACTCTTGTTGGCCCGTCGAGTTCTTAAGAAGCTTGAAATGGATGAGGAATATGAAGGAAATGTAGAGGGAGCTCTGGATGGGGGTTTGGATATCCCTCATAGTGAGAAAAGGTTTGCTGGCTTTGATAAGGATAAGAAGGAGCTTGATGCTGAGGTTCATCGCAAATATGTCTTTGGTGGACATGTTGCTGCTTATATGAAGACATTGAATGAGGATGAGCCAGAGAAATACCAGTCACACTTTAGTGATTATATCAAGCGGGGAATAGAGCCTGATGGTCTGGAAGATCTGTATAAGAAGGTTCATGCTGCCATCAGAGCTGAACCTACTTTCAAGACATCCGAGAAACAGGCACCAAAGGAGCATAAGAGGTACAATCTGAAGAAACTCACTTATGAGGAGAGAAAGGCTAAATTGGTTGCACGCTTGCAGGCTCTCAACTCTGCTGCCGGTGATGATGATGATGAGGATGATGAGTGA 783 0.4419 MLKAFVKAQKSRAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVTNKDIIAQITSATIAGDNVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKKLEMDEEYEGNVEGALDGGLDIPHSEKRFAGFDKDKKELDAEVHRKYVFGGHVAAYMKTLNEDEPEKYQSHFSDYIKRGIEPDGLEDLYKKVHAAIRAEPTFKTSEKQAPKEHKRYNLKKLTYEERKAKLVARLQALNSAAGDDDDEDDE 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00665 260 CDD Ribosomal_L18_L5e 43 130 - -
Vian9g00665 260 SUPERFAMILY Translational machinery components 13 212 - -
Vian9g00665 260 Hamap 50S ribosomal protein L18 [rplR]. 16 206 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vian9g00665 260 PRINTS Ribosomal protein L5 signature 83 103 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vian9g00665 260 PRINTS Ribosomal protein L5 signature 22 41 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vian9g00665 260 PANTHER RIBOSOMAL PROTEIN L5-RELATED 4 123 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vian9g00665 260 Gene3D - 123 251 - -
Vian9g00665 260 Gene3D - 3 122 - -
Vian9g00665 260 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 16 123 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vian9g00665 260 Pfam Ribosomal L18 C-terminal region 195 248 IPR025607 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00665 Vian-Chr9 8347919 8353161 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00665 4 252 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 67.698 1.64e-139 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00665 K02932 - gmx:100805868 426.402