Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00654 ATGTCCATGGCAGGGCGGTTGCAGTTATACGACGGTGTTCGCGAAGAAGATAGTGGTGAAATATTTGGAGGCTCGAACGACGATTCTTTGTGCCGTTTCGAGAGGTTGTTTGCAGAGTTCTTTAGTGAGATCTGTGCATTTAATTGCGTTTTGCATTATCCTCCAATGCTGTCTGATGGGCAGGACGTGGATTTGTATAGGTTGTTTTTGGTGGTAAGAGGGAAGGGTGGATACGATGCCGTTTGCAAAGGGAAGTTGTGGGATTCGGTTGGGGAGGAGTCTGGGATGGGAGTGAGTGTTGGGTCCTCTGTTGAGTTGGTTTACAGTAGGTACTTGAGTGCTTTGGATTCATGGATGAAGAAAGTTGCTGAGAGTAAGGTGTCTCCCGAATTTGGTGTGGTGGATGATAGGGATAAGTTTGGGAGGCGGTTAATGGAGTTGCAGGCTGAGGTGGAAGGGTTGCTTTCCGGTTGTGCGGATGAGAGGGTGGTTTTGGTTGGGGAGGATGTCGAGGGTGGTCTTGATGAAGATGATCACAACTTGGATGGGAGGGAGTTATCCGGTGCTAATGGGGTGAAAAGTAACGGTGATGAAGGAGGTGAACATAGACAATGTGATGATTCGGAGATGCCGGACAATGACATGGATGAGGCGGTTCTTGGAAACTCGGATAAGGGAAATGATTTAATGGGAGGGGAGGAAGGGTTTGATGGAGGGAAAATGCCTGAAGAGCAGGCTGTGGATATATCGGATGGGGCTAACAAAAGTGGGACTGGAGTGGTGAGTGGAGGCAAGCAGTGTGACGACAGTGATGATAAGGGCTTGGTGTTGGATGCATCTGGTGGTAATAGTGATGATGATAGTTCTGGTCACAAGAGGAAGAGAGAGGGGTCTGTGTGGGATTCATCTAGTGATGATTGTGATAGTCCTAGTCGTAAGAGAATGCGAGAGTCTGCAATGGATATGCTGAGCTGGATTACTGGTGTTGCAAAAGATCCCGGTGATCCTGAAGTTGGTTCAATACCTGAAAAGTCAAAGTGGAAGTCTTACAGTAGTCAGGAGGTGTGGAAACAGGTGCTGTTGTTTCGGGAAGCTACGTTTTACAGAAGAGGTTCTGAGGCAAGCAATGAACAACGTAATTGGCAGAATCAGAAGATGCATCCGTGCTTGTATGAAGAACAAGTTGGGACAAACTACAATCTCAGAGACAGGTTGAAATGTGACAAGAAGCTTTTGTTTGGCAAATCTGCATCTTTGCGAAGCTCTTCTGATTCATCTTTGGCAACTGAGAACAGAACACCTGGTTCTCACACTGAAGGTCAATCTGAGTTGCGTGATTCTCCAGATGCAAATTCAGGTCTTGACAAATGTGCAACAGTACGCATTCCTTTGGGGACAAATCATCAAGCCGAAATACCAGAATGGACTGGTGTGACTTCTGAAAGTGATTCTAAGTGGTTAGGGACTCGAATATGGCCACAGGAAACAGTAAATACCAGACTTATTGAAAGGGACCCCATAGGAAAGGGGAGACAAGGTTCATGTGGCTGCCCAGAAGAAGGTTCTGTTGAGTGTGTAAGATTTCACATTTCAGAGAAAAGGGCTAAAGTTAAGCTGGAATTGGGCAATGCATTTTACGATTGGGACTTTGATCGGGTTGGTGAAGAAGTTAGGCTAATGTGGACGAAAGAAGAAGAGAAAAAGTTTGAGGATGTGGTTCGGTCAAACCCTCCATCACTTGAGAAATATTACTGGGACTATATTTTTAGGGCATTTCCTGATAAAAGCAGGGCAGAGTTAGTTAGCTACTACTTCAATGTCTTTATGTTGCAGCGCAGAGGATACCAGAATAGGCACACTCCCGATGACATTGATAGTGATGACAATGATGACGAAGCTGGACCATTAAGGAATGTTTTTGGACCTCAGATACAGAATTCTGGACATGAGATGCAGAGTTCGCGAGGCTCCATCTTATTAACCCCCAAAAAGACACGTAAAAAGGGAAAATAG 2013 0.456 MSMAGRLQLYDGVREEDSGEIFGGSNDDSLCRFERLFAEFFSEICAFNCVLHYPPMLSDGQDVDLYRLFLVVRGKGGYDAVCKGKLWDSVGEESGMGVSVGSSVELVYSRYLSALDSWMKKVAESKVSPEFGVVDDRDKFGRRLMELQAEVEGLLSGCADERVVLVGEDVEGGLDEDDHNLDGRELSGANGVKSNGDEGGEHRQCDDSEMPDNDMDEAVLGNSDKGNDLMGGEEGFDGGKMPEEQAVDISDGANKSGTGVVSGGKQCDDSDDKGLVLDASGGNSDDDSSGHKRKREGSVWDSSSDDCDSPSRKRMRESAMDMLSWITGVAKDPGDPEVGSIPEKSKWKSYSSQEVWKQVLLFREATFYRRGSEASNEQRNWQNQKMHPCLYEEQVGTNYNLRDRLKCDKKLLFGKSASLRSSSDSSLATENRTPGSHTEGQSELRDSPDANSGLDKCATVRIPLGTNHQAEIPEWTGVTSESDSKWLGTRIWPQETVNTRLIERDPIGKGRQGSCGCPEEGSVECVRFHISEKRAKVKLELGNAFYDWDFDRVGEEVRLMWTKEEEKKFEDVVRSNPPSLEKYYWDYIFRAFPDKSRAELVSYYFNVFMLQRRGYQNRHTPDDIDSDDNDDEAGPLRNVFGPQIQNSGHEMQSSRGSILLTPKKTRKKGK 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00654 670 SUPERFAMILY ARID-like 38 123 IPR036431 GO:0003677
Vian9g00654 670 SMART bright_3 35 121 IPR001606 GO:0003677
Vian9g00654 670 Gene3D - 30 129 IPR036431 GO:0003677
Vian9g00654 670 MobiDBLite consensus disorder prediction 618 670 - -
Vian9g00654 670 MobiDBLite consensus disorder prediction 422 455 - -
Vian9g00654 670 CDD ARID 32 116 - -
Vian9g00654 670 SMART ELM2_2 462 512 IPR000949 -
Vian9g00654 670 MobiDBLite consensus disorder prediction 285 316 - -
Vian9g00654 670 Pfam ARID/BRIGHT DNA binding domain 52 114 IPR001606 GO:0003677
Vian9g00654 670 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 26 665 - -
Vian9g00654 670 SMART ARID_2 31 116 - -
Vian9g00654 670 ProSiteProfiles ARID domain profile. 27 120 IPR001606 GO:0003677
Vian9g00654 670 MobiDBLite consensus disorder prediction 640 660 - -
Vian9g00654 670 MobiDBLite consensus disorder prediction 172 316 - -
Vian9g00654 670 MobiDBLite consensus disorder prediction 422 448 - -
Vian9g00654 670 CDD SANT 561 608 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00654 Vian-Chr9 8114992 8118528 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vian9g00654 ARID 3.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00654 - - pvu:PHAVU_010G100300g 956.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00595 2 7288113 7291565 Vian9g00654 9 8114992 8118528 PCT