Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00650 ATGAATTATTGTTTTTGTTTCATAGCTGCATCGAATGGCTCCAGAGCTGGTTCTAGAGCTGGTAGTCAGAGAGGGCGTAACTCAAATGGAGGTATGAACATCGGTTCATACAACATAGTACAAAGGAAAGAACCTGGCGTTGTGAAATTCACCATGGAGGAAATCTTCCAAGTCACAAGAAATTTCTCCCCTTCTTTCAAGATTGGCCAAGGAGGTTTTGGTGCTGTGTACAAGGCAAAACTCTTGGATGGGACTGTTGTTGCAGTAAAGCGTGCGAAGAAGAGTCTATATGAGAAACATTTGGGGGTGGAGTTTCAGAGCGAGATCCAAACACTATCCAAGGTGGAACATTTGAACTTGGTCAAGTTGTATGGATATTTGGACCAAGGTGATGAAAGGATCATTGTTGTTGAGTATGTTCCAAATGGAACCCTCAGAGAACATTTAGATTGCATTCATGGGAGCGTTCTGGACCTTGCTGCACGTTTGGATGTAGCAATTGATGTTGCTCATGCTATCACCTATCTTCATATGTATATAGATCATCCTATCATTCATAGAGACATAAAATCTTCAAACATTCTTCTCACTGAAAATTTTCGAGCTAAAGTAGCAGACTTTGGTTTTGCTAGACAAGCAGCAGACAGTGACTCTGGCATGACACATGTTTCCACCCAAGTCAAAGGAACAGCTGGTTACTTGGATCCTGAATACCTGAAAACCTATCAACTAACTGAGAAGAGTGATGTGTATTCATTTGGAGTTTTGCTTGTTGAACTTGTCACAGGAAGACGCCCCATTGAACCAAAATTTGAACTCAAGGAGCGAATAACAGCAAAATGGGCTATGAAGAGGTTCATGGAGGAAGATGCTATCTCAGTCTTGGACCCAAGACTGGATCAGACTGCCGCAAACACTTTGGCACTGCATAAGATTCTGGAGCTAGCTTTACAGTGCTTGGCTCCACGTAGACAAAACAGGCCTAGCATGAAAAGATGTGCCGAAATCCTTTGGTCCATCCGCAAGGATTTCAGAGAGCAGTTATCAGCTTCAAACTTCCGCTCATTTTCCACTTCTTCCCAAAGGAGCACCTCACTGAGAGAGTGA 1107 0.4291 MNYCFCFIAASNGSRAGSRAGSQRGRNSNGGMNIGSYNIVQRKEPGVVKFTMEEIFQVTRNFSPSFKIGQGGFGAVYKAKLLDGTVVAVKRAKKSLYEKHLGVEFQSEIQTLSKVEHLNLVKLYGYLDQGDERIIVVEYVPNGTLREHLDCIHGSVLDLAARLDVAIDVAHAITYLHMYIDHPIIHRDIKSSNILLTENFRAKVADFGFARQAADSDSGMTHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVELVTGRRPIEPKFELKERITAKWAMKRFMEEDAISVLDPRLDQTAANTLALHKILELALQCLAPRRQNRPSMKRCAEILWSIRKDFREQLSASNFRSFSTSSQRSTSLRE 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00650 368 SMART serkin_6 62 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g00650 368 ProSitePatterns Protein kinases ATP-binding region signature. 68 94 IPR017441 GO:0005524
Vian9g00650 368 Gene3D Transferase(Phosphotransferase) domain 1 140 362 - -
Vian9g00650 368 CDD STKc_IRAK 68 337 - -
Vian9g00650 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672|GO:0006468
Vian9g00650 368 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 140 351 - -
Vian9g00650 368 Gene3D Phosphorylase Kinase; domain 1 27 139 - -
Vian9g00650 368 Pfam Protein kinase domain 67 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g00650 368 ProSiteProfiles Protein kinase domain profile. 62 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g00650 368 PANTHER OS01G0750732 PROTEIN 26 353 - -
Vian9g00650 368 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 2 22 139 - -
Vian9g00650 368 SUPERFAMILY Protein kinase-like (PK-like) 39 340 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00650 Vian-Chr9 8009272 8011084 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00650 46 330 Receptor kinase-like Gene Family AT1G79620 46.021 2.54e-71 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Vian9g00650 Pkinase 2.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00650 - - gmx:100792034 598.201