Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00622 ATGGTGGACGGCGGAGAATTCGCCGGCACCATTTGCTCGATCTGTTACGAGCCTCTCAACCCCATTACCGAGGACCTCCAATCGGTTTCCATCTGCGGCCACGTCTTTCACGAGCTTTGTCTGCAGCAATGGTTCGAGTACTCTTCGAAAGGGAAGAAACACACTTGCCCCATTTGCAAACAGAGTTGCGGGGCCAGTGACGCGTGCAGGCTTTATTTTCAGTCAGTGGGGGACGCGAGCGATGGCGGGAAGCTTCTGAAGAGCTTTGAATCTGAGGAAAATGTCGGGCTTCTGCGTACGGAAGTGAAGAGATTGGAGGTGAAAGTTTCGGGGCTTAATTCTGAGCTAGAACGGCAAACAAAGGAATTAGAAGGAGTTAAGCAGGAGCTTTGTATTTGCAAGGAGCAGGCAAAGATAGATACAGCATTAAAAAGTGAGGCACTAAATCAAAAAGCGTCCATACAATTCCAGTTTCATAAGAAATCAGAGGAACTTGAGAAGTCAACTTTGGAGTCTTTTAGATTAAAAGAAAAGAATATGGCTTTGGCTAAAGAACTTGCAGCATTAAAATTAGTGTCTGATCTGGACCTTGATGAAGAGGAGGTTTTGAAGCTTGCCACTTTCGGTAATGGGGCCAACAGTAAAGACACTATAGATACATTGAAAAGATCTCTGGTCATGCGGAACAGGAGTTACAAAGAATTGATGGCCAAGTGCAATGTTCTTGGAAGAGGTGAGGCTCGTTATAGCAAAAAGCTTGAGAAGGCCAAAGAAAAGATCAGTAAACTGAAGGCAAGGATACTAGAACTGGAGACGTTAGCTGAAGCAAAAGAGAATGAATATTTGATGTCTCTGAAACTTTCAAAGAGAACGAAAATTTCAAAGAATCTTGAGAATAATTACACTGATTCTGATGCATGTGCTTCCAAATTTTCAGTAGAAAAACCAAGCAAACAAATTTCAACACCCAAATCTGGAATAAACCTGCCTGCAAACGACAACTCTAAATCTTTTCAATCTTTGAAGATCGAGAACTCCAATGGTACTACAAATAAGACTGTGAATATTAGTAATGTGACTCCTGATAAAGAGAGGGACTATATTACAATTGATGAATATGACTTAGAAGGCACTAAACCTTTGCAAGGATGTTCAAAATACAGCTACAAAGACCGAGACATGGATGGTATGTCTTTTAGCAAGCCTTCTCTAACGAAGCCGGAGACCACGTCTGCCACAAAGACCGAAACATTATTGCTACGAAAATGTACTTTGGTTGAGTCTCCCAGAGTTGATATTGACATTGACATGACTAACAATTCAGCTGGTCCTGTGGATGAAGAAGTAACTTTGCAAACAACCATTAAACAACCTGTGTTGAACATTAGAAAGGAGTCACCATTTACACTTTCAAATTCAGATAATATCTGCTTTTCTGGTGGATTGCTTGGTCCTGATGGAACTCATCGGTTTTTGGGAAAATGGTGCAAGCGTGGACAGAACAGTGAATCATCATCTGCAAAAAGATCAAGTAATGGGGATTTAATAGCTGGTAGTAAGGAAAACTCAGCAAGTTCAAAACGGTTAAAGCTTGGAGCTAAACCAAGTAGTTTGCATTCCCAGGGATGTCTGCAGATAGAACACTTTTTTGGAAGAGTCACTCAGTAA 1668 0.4149 MVDGGEFAGTICSICYEPLNPITEDLQSVSICGHVFHELCLQQWFEYSSKGKKHTCPICKQSCGASDACRLYFQSVGDASDGGKLLKSFESEENVGLLRTEVKRLEVKVSGLNSELERQTKELEGVKQELCICKEQAKIDTALKSEALNQKASIQFQFHKKSEELEKSTLESFRLKEKNMALAKELAALKLVSDLDLDEEEVLKLATFGNGANSKDTIDTLKRSLVMRNRSYKELMAKCNVLGRGEARYSKKLEKAKEKISKLKARILELETLAEAKENEYLMSLKLSKRTKISKNLENNYTDSDACASKFSVEKPSKQISTPKSGINLPANDNSKSFQSLKIENSNGTTNKTVNISNVTPDKERDYITIDEYDLEGTKPLQGCSKYSYKDRDMDGMSFSKPSLTKPETTSATKTETLLLRKCTLVESPRVDIDIDMTNNSAGPVDEEVTLQTTIKQPVLNIRKESPFTLSNSDNICFSGGLLGPDGTHRFLGKWCKRGQNSESSSAKRSSNGDLIAGSKENSASSKRLKLGAKPSSLHSQGCLQIEHFFGRVTQ 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00622 555 MobiDBLite consensus disorder prediction 500 530 - -
Vian9g00622 555 Coils Coil 102 129 - -
Vian9g00622 555 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 172 IPR013083 -
Vian9g00622 555 ProSiteProfiles Zinc finger RING-type profile. 12 60 IPR001841 -
Vian9g00622 555 SMART ringv_2 11 60 IPR011016 GO:0008270
Vian9g00622 555 MobiDBLite consensus disorder prediction 500 537 - -
Vian9g00622 555 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 553 - -
Vian9g00622 555 SUPERFAMILY RING/U-box 10 64 - -
Vian9g00622 555 SMART ring_2 12 59 IPR001841 -
Vian9g00622 555 Pfam Ring finger domain 11 60 IPR001841 -
Vian9g00622 555 Coils Coil 246 280 - -
Vian9g00622 555 CDD RING-H2 12 60 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00622 1 555 C3H Transcription Factor Family AT4G01270 39.829 4.23e-110 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00622 K11985 - gmx:100812811 775.393
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00622 9 7566140 7570214 Vian9g00622 9 7566140 7570214 ECH