Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00621 ATGGAACCAGATTGGGATCTCCACGCCGTAGTCAGAAGCTGCACCACTACTTCCTCCGCCGCCGCCGCCGCCGCCACAACCGTATCCACCACCTCATCTGGTTTTGGGGCTTCTGTCCCACCTTCTACTCCCCGCAGCTTCTTCTCTGTTTACAACCCTGCTGTACAAGGAGGTCAAGTTGTGTCTCCTTTGGAGAACCCCTATGGAACAAGGCCTTCCATTGAAGAGCTTCACGAGCTTTGCAAGCCTTTCTTCATCAAACCACAGCCTCACACCTTCCAACCTTCTTCTCCTCTTTCTTCCTTTTCTTATTCATCAGTGTCCAAATCACCTTGTAGCCAGCAAGAACAGAAGCAGCCTCCTCAACCAGGTTCTGCCTCCACCCCAAAACAGAAAAGAAGGAAGAATCAGGTTAAGAAGGTTTGTGATGTGGCAGCTGAGAATCTCTCCTCAGACATATGGGCATGGAGGAAATATGGACAGAAACCCATCAAAGGGTCACCATATCCAAGGGGATATTACCGATGTAGCAGCTCAAAAGGATGTTTAGCCAGAAAACAGGTGGAGAGGAACAAATCGGACCCAACAATGTTCATAGTGACATACACTGGTGAACACGACCACCCTGCTCCTACTCATAAAAGCTCCCTTGCTGGCTCCACTCGCTACAAACCTCAGACTGGTGGAGACACAACCACCACAAAACCTGTTTCTCCAGCGACCTCATCAGAGGTGGCACAACACAGTACAAAGTCAGAGTGCATAGAAGAGGAGTTGGAAGATCTGATGAAAGATGATGAAGAAGCAAATGAATTTGACTCAACAGAAACAGTGGTATCAGATGATTTCTTTGAAGGGTTAGAGGAACTGACAGGGTCTGCCATTGACCCCTTTACAGCTACTAGTAGCATTTATCGGTGGTCACTGGCCAATAATGCTACCACTGCCGCTGGTGAGGAAGAAAGTGAAGACGAAGGTGATGGTAACGAATATGACAACTCTTCTAATATTGCAGCTAAAGGTTGTGGGTTGTTACGTATATTACATATCAGGAACTCATTGTGCTTAATGAATCCTGTGGTTGCGATGAAAATGAAAAACCAGGTTTCCTTGCCTTCAGCCAGTGAGGTTGTGAAACCTAACAAAACTTCTCATATTAGATCTTTTAGCCCAATTCCAGCTATAAAGAAGGCTTGGGATGCAATTCACAGGAACAAATCAAGCTCCTGGGCACCGTCACCTGACAAGCAAGAGGGTAAAAAGAAATTGGCTAGTGTATCAAATAGATTTACCTATTCTGGTGAATTACTTTCAGGTAGACTCTCTCCCTTCCGTCACTCAAGAGTAGCTGCTATTGTTATATCTCCCTCTCGAAGACCTCAATCTCCCTTTTGCGGCGTCAAGTTGCTTGGTGATTCTAGAGAAGCTGAAAATTACAAGTTTGGCAAGGTTAAATTCCACATTGGTGTGCTTGGAAATGTTCAAGATGTGTAG 1494 0.4585 MEPDWDLHAVVRSCTTTSSAAAAAATTVSTTSSGFGASVPPSTPRSFFSVYNPAVQGGQVVSPLENPYGTRPSIEELHELCKPFFIKPQPHTFQPSSPLSSFSYSSVSKSPCSQQEQKQPPQPGSASTPKQKRRKNQVKKVCDVAAENLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNKSDPTMFIVTYTGEHDHPAPTHKSSLAGSTRYKPQTGGDTTTTKPVSPATSSEVAQHSTKSECIEEELEDLMKDDEEANEFDSTETVVSDDFFEGLEELTGSAIDPFTATSSIYRWSLANNATTAAGEEESEDEGDGNEYDNSSNIAAKGCGLLRILHIRNSLCLMNPVVAMKMKNQVSLPSASEVVKPNKTSHIRSFSPIPAIKKAWDAIHRNKSSSWAPSPDKQEGKKKLASVSNRFTYSGELLSGRLSPFRHSRVAAIVISPSRRPQSPFCGVKLLGDSREAENYKFGKVKFHIGVLGNVQDV 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00621 497 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 4 291 IPR044810 GO:0003700
Vian9g00621 497 MobiDBLite consensus disorder prediction 96 139 - -
Vian9g00621 497 MobiDBLite consensus disorder prediction 96 131 - -
Vian9g00621 497 SUPERFAMILY WRKY DNA-binding domain 147 211 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian9g00621 497 ProSiteProfiles WRKY domain profile. 145 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian9g00621 497 SMART WRKY_cls 150 210 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian9g00621 497 MobiDBLite consensus disorder prediction 214 249 - -
Vian9g00621 497 Pfam WRKY DNA -binding domain 152 209 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian9g00621 497 FunFam WRKY transcription factor 22 134 204 - -
Vian9g00621 497 Gene3D WRKY domain 134 204 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian9g00621 497 Pfam Protein of unknown function (DUF688) 305 433 IPR007789 -
Vian9g00621 497 MobiDBLite consensus disorder prediction 203 251 - -
Vian9g00621 497 Coils Coil 245 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00621 Vian-Chr9 7537144 7543473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00621 1 318 WRKY Transcription Factor Family AT4G01250 44.970 8.12e-74 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vian9g00621 DUF688 5.6e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00621 K13425 - gmx:100815829 408.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00621 9 7537144 7543473 Vian8g00993 8 26471242 26472716 ECH
Vian9g00621 9 7537144 7543473 Vian3g00672 3 6802957 6804139 ECH
Vian9g00621 9 7537144 7543473 Vian9g00621 9 7537144 7543473 ECH
Vian9g00621 9 7537144 7543473 Vian2g00567 2 6873673 6875255 ECH
Vian9g00197 9 1613103 1617973 Vian9g00621 9 7537144 7543473 ECH
Vian2g00567 2 6873673 6875255 Vian9g00621 9 7537144 7543473 PCT