Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00557 ATGGAAGAGAGTGCGCAGTGCGAACAAGTTAGTGTCATTGATGAGTTGCTGCTAGGGAAGGAGCTCACAAAGAAGCTTTGTGAGCAACTATTCTCATCTTCCTCTTCCTCATCATCATCCTCCTCCTCTTCTTGTGACACAAATGAAGTCTTGATTGAGAAAATAATTTCCACCATGGAGAAGGCACTTGCCAAGGTGAATTGTATGGCTAATGTAGGAGAAAGTAAGGCCATGATGGATTCCCATTGCTCTTTCACAAATGGTAGTCCCAAAAGTGAGGTCGTGGAGCCTGAGGTTGAGCACAAACATGTCTCTAAGAAAAGAAAGACCATGCCAAGGCGGAGAGAGCAAGTGGAGGTGTGCTTGGGAACAGAAGGAAATAAGGAAGATGGCTATAGCTGGAGAAAGTATGGGCAGAAGGACATTCTTGGAGCAAAGTTTCCAAGGGGATATTACAGATGCACATATAGAAACATACAAGGATGTCTGGCCACTAAGCAAGTGCAAAAGTCAGATGAAGATCCAATGATATACGAGATAACATACATAGGAAGACACACATGCACCCAAGCAAGTCACTTGAAAAAGACAGCGGTGCCCCCATCAAAAACCAAGGTGAGAATCGAAGAAAACAAGCACCAAACCAATGAAAAGAATCAACCACAACAAGAGAAAATAGAGCAACCCCCAGAGACAATTTTCTCCTTTGGATCACAAGGTGAAGTTAAAGTAGAGGATTTGGACTTAGAAATTTTCCCATCATTTTGCTTCTCTTCTCCATCAGTAGGGTCTGAAAACGAGGAAAACAACAACATCTTCCCTCACTCCATGATCGACAACAACTTATTGGAAAACTTCTCTTCTTCATTCATGTCTACAACAATAACTTCAGAATCAGACATGTTCTGCAACTGGGAGAGCATTGGACTAGGCCAAAGTGTGCATAACTCCACTTCAGATATTACTGATATAGTTTCCACACCAACTTCAGCCACCTATTCCTCAATAATGGACCTTGATGATATCTTCCTTGATAAGAACGATTTCGACACAGATTTTCCTATGAACACCAGAGAACTTTGCATTTGA 1089 0.4197 MEESAQCEQVSVIDELLLGKELTKKLCEQLFSSSSSSSSSSSSSCDTNEVLIEKIISTMEKALAKVNCMANVGESKAMMDSHCSFTNGSPKSEVVEPEVEHKHVSKKRKTMPRRREQVEVCLGTEGNKEDGYSWRKYGQKDILGAKFPRGYYRCTYRNIQGCLATKQVQKSDEDPMIYEITYIGRHTCTQASHLKKTAVPPSKTKVRIEENKHQTNEKNQPQQEKIEQPPETIFSFGSQGEVKVEDLDLEIFPSFCFSSPSVGSENEENNNIFPHSMIDNNLLENFSSSFMSTTITSESDMFCNWESIGLGQSVHNSTSDITDIVSTPTSATYSSIMDLDDIFLDKNDFDTDFPMNTRELCI 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00557 362 ProSiteProfiles WRKY domain profile. 123 186 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian9g00557 362 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 8 352 IPR044810 GO:0003700
Vian9g00557 362 SMART WRKY_cls 128 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian9g00557 362 FunFam WRKY transcription factor 53 114 191 - -
Vian9g00557 362 Pfam WRKY DNA -binding domain 129 188 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian9g00557 362 SUPERFAMILY WRKY DNA-binding domain 127 190 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian9g00557 362 Gene3D WRKY domain 104 183 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian9g00557 362 MobiDBLite consensus disorder prediction 209 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00557 Vian-Chr9 6377674 6379678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00557 40 297 WRKY Transcription Factor Family AT5G24110 37.262 3.73e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vian9g00557 WRKY 2.2e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00557 - - gmx:100170747 466.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00557 9 6377674 6379678 Vian9g00557 9 6377674 6379678 ECH
Vian10g00210 10 1849563 1850783 Vian9g00557 9 6377674 6379678 ECH
Vian6g01049 6 27807803 27809567 Vian9g00557 9 6377674 6379678 PCT