Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00547 ATGAAGCCTCGCACTCTTCCTCTTCTCTCGCGTGCCTTCTTCTTCCCTCCCTCCAAGTTTCTCCGAAGCGCACCTTTTAAAGCTCGCGCCTTTTCCTCCCGGGCCCACGCTCACGCCCGCGACAAGCTTCCGGTTCGCCCCTCCAAGAGCCTCGTAGACGACGAGGCTGACCTCAGCGACTGGGTCGATGATTTGCGGACCGGCAAGGTCGACCGCTTCTCCCAGCGGTCCAGCAGCGACCACGATGAAGACCGAAAATTCCGGCCGCCGCCGAGGAACAACAATAGGGCTTCCACCAATTTGGGGAAGAGGAGGGGCGAGGGTTTGCGGATGGGAAGGCAGAATGCGAACGCAAGGAGAAAGATTCAACCAAGGAGTGACGACGATGAGGAAGTGGTGGAGAGTGGAAGGAAGTTCAAAGGTGGTGGCGTTGGAGCGTTTATCAGCGAAGATGAAAGTGAAGATGAAGAGAGTGATGGGAGTGAGGAGGAGGAGATATTGAACAAGAGTAGAACCGCTTTGTTTGGTCAACAAAACGGTCTGAACCGGAGGACGGTTGAACCGACTCCTAGACCATCTTCTACTGGGGGTTCTGATTCTTATCTGAGATTAACTCTCCCCCCTCTTCGAAACCTGCAAAGCCCTTGGAAAACTGGGCTTTCATTGGGTTTAGGCCTCAGTTTGATTGTCCAAATTGAATTTGGATGTTTTACCTTGACCACTGACTGCTCTCAACGCGTATTGACTGAGTTGCCTGTCTTGCCATCTTTCGAATTATTTGACCAATGTTCCGTCTCCCAGCTGTCACTTAAAGGAGTAAAGGATGCTGGATATGAGAAAATGACAGTTGTGCAAGAGGCTACTCTTCCAGTAATTCTCAAAGGTAAGGATGTCCTTGCCAAGGCCAGGACAGGCACAGGAAAAACAGTAGCATTTTTGCTTCCATCAATTGAAGTTGTGGTGAAGTCACCTCCAAGTGATCGTGACCACAGGCGGCCACCAATTTTTGTTCTTGTCATATGCCCGACTCGAGAACTTGCAAGTCAGGCTGCCGCAGAGGCCAATAAACTGCTGAAGTATCATCCTACCATTGGTGTTCAAGTTGTGATTGGAGGCACAAGACTTGCTTTAGAACAGAAACGAATGCAAGCAAACCCTTGCCAGATCCTTGTTGCTACTCCTGGAAGGCTTAGAGATCATATTGAAAATACTGCTGGTTTTTCAACTAGACTGATGGGTGTGAAGGTTTTGGTGCTTGATGAAGCTGATCATTTACTTGACATGGGATTTCGCAAAGACATTGAGAGGGTAATTGCTGCAGTCCCTAAACAACGACAAACTCTTATGTTTTCTGCCACAGTTCCAGAAGAGGTGCGTCAAGTTTGTCATATTGCTTTGAGAAGGGATCATGAATTTATCAATACAGTTCAAGAGGGTACTGAGGAGACACATTCACAGGTCCGCCAGATGCATTTAGTTGCCCCATTGGACAAGCATTTCCCTTTACTATATGTTCTTCTGAAGGACCACATTGCAGATGATGTTGATTATAAGGTTCTTGTTTTCTGCACAACTGCTATGGTCACTAGACTTGTTGCTGAACTTCTTGGTGAGTTGAACTTGAATGTGAGAGAAATCCATTCAAGAAAGCCTCAGAGTTATAGAACCAGAGTCTCTGAGGAATTTCGGAAGTCAAAGGGTCTCATCCTGGTTACTTCAGATGTATCTGCTCGTGGAGTTGATTATCCAGATGTCACTCTTGTTCTACAGGTTGGTTTGCCCGCAGATAGAGAACAATATATACATCGCTTGGGTAGAACAGGCCGAAGAGGGAAAGAAGGGCAGGGCATACTGCTGCTGGCTCCTTGGGAAGAGTTCTTTTTATCTACTGTAAAAGATTTGCCTATTGAGAAAGCTCCCGTGGTGCCGTCAGTTGATCCTGATACTAAGAGAAAGGTAGAAAAAGCTCTATCCCATGTGGATATGAAGAACAAAGAAGCAGCATATCAGGCATGGCTTGGTTACTACAATTCGAACAAGAAAGTGGGGCGTGACAAGTATAGGCTAGTGGAGCTTGCAAACGAGTTTAGTCGAAGCATGGGGCTTGATAACCCTCCAGCTATTGCTAAGCTGGTCCTTGGCAAGATGGGCCTCAGGAATATCCCTGGTTTACGTGCCAAATAG 2184 0.4744 MKPRTLPLLSRAFFFPPSKFLRSAPFKARAFSSRAHAHARDKLPVRPSKSLVDDEADLSDWVDDLRTGKVDRFSQRSSSDHDEDRKFRPPPRNNNRASTNLGKRRGEGLRMGRQNANARRKIQPRSDDDEEVVESGRKFKGGGVGAFISEDESEDEESDGSEEEEILNKSRTALFGQQNGLNRRTVEPTPRPSSTGGSDSYLRLTLPPLRNLQSPWKTGLSLGLGLSLIVQIEFGCFTLTTDCSQRVLTELPVLPSFELFDQCSVSQLSLKGVKDAGYEKMTVVQEATLPVILKGKDVLAKARTGTGKTVAFLLPSIEVVVKSPPSDRDHRRPPIFVLVICPTRELASQAAAEANKLLKYHPTIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFSTRLMGVKVLVLDEADHLLDMGFRKDIERVIAAVPKQRQTLMFSATVPEEVRQVCHIALRRDHEFINTVQEGTEETHSQVRQMHLVAPLDKHFPLLYVLLKDHIADDVDYKVLVFCTTAMVTRLVAELLGELNLNVREIHSRKPQSYRTRVSEEFRKSKGLILVTSDVSARGVDYPDVTLVLQVGLPADREQYIHRLGRTGRRGKEGQGILLLAPWEEFFLSTVKDLPIEKAPVVPSVDPDTKRKVEKALSHVDMKNKEAAYQAWLGYYNSNKKVGRDKYRLVELANEFSRSMGLDNPPAIAKLVLGKMGLRNIPGLRAK 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00547 727 Pfam DEAD/DEAH box helicase 283 460 IPR011545 GO:0003676|GO:0005524
Vian9g00547 727 MobiDBLite consensus disorder prediction 69 201 - -
Vian9g00547 727 Gene3D - 481 709 IPR027417 -
Vian9g00547 727 MobiDBLite consensus disorder prediction 149 163 - -
Vian9g00547 727 MobiDBLite consensus disorder prediction 171 201 - -
Vian9g00547 727 MobiDBLite consensus disorder prediction 34 53 - -
Vian9g00547 727 CDD DEADc_MSS116 265 474 - -
Vian9g00547 727 Gene3D - 240 473 IPR027417 -
Vian9g00547 727 MobiDBLite consensus disorder prediction 31 53 - -
Vian9g00547 727 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 335 627 IPR027417 -
Vian9g00547 727 Pfam Helicase conserved C-terminal domain 511 611 IPR001650 -
Vian9g00547 727 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 506 654 IPR001650 -
Vian9g00547 727 PANTHER RNA HELICASE 166 656 - -
Vian9g00547 727 CDD SF2_C_DEAD 487 620 - -
Vian9g00547 727 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 289 472 IPR014001 -
Vian9g00547 727 SMART ultradead3 277 490 IPR014001 -
Vian9g00547 727 MobiDBLite consensus disorder prediction 120 137 - -
Vian9g00547 727 SMART helicmild6 530 611 IPR001650 -
Vian9g00547 727 MobiDBLite consensus disorder prediction 69 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00547 Vian-Chr9 6267955 6273839 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00547 260 642 Eukaryotic Initiation Factors Gene Family AT3G19760 29.114 3.05e-47 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00547 - - gmx:100795739 1029.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00547 9 6267955 6273839 Vian9g00547 9 6267955 6273839 ECH