Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00546 ATGAGCGTTGCTGAAGGGAAAGAGATTGTTGTGTTTTTGGACTATGATGGAACACTCTCACCGATTGTAGATGACCCTGATAAAGCTTACATGAGTGATGCTATGCGTGCAGCTGTACGTGAAGTTGCTTATTGTTTTCCCACTGCCATTGTTAGTGGAAGGCGTAAGGATAAGGTGTATGAATTTGTGAAGTTAAGGAATGTTTACTATGCTGGAAGTCATGGTATGGATATATCAACTCCATCAGGGTCTTCAAAATGTGAAGATCAGAAGCATCAGATAAAGGGTGTTGATGAAAAGGGTAATCATGTTGTTCACTTTCATCCCGCAAAAGAATTTTTGCCAACCATTCAAGAGATAATTAAGGTTTTGAAAGAAAACACAAGAAGAATAAAGGGCTCTATGATTGAGGATAACATGTTCTGTGTCACTGTACACTACCGGTGTGTGAAAAATGAAGAGGATATTAGTGTTCTGAGAGAAATGGTGGAGTCCACAATGAAATCTTACTCCAATTTCCACATATCAAGTGGAAGAAAGGTTATGGAGATACGTCCGAATGTAAACTGGGACAAAGGGTGTGCTCTTATGTATTTGCTTGACACTCTTGGCTTTGACAACTTCAACAATGTTCTTCCTATCTACCTCGGTGATGATAGAACTGATGAAGATGCTTTTAAGGTTATAAGACACATTGGACAAGGTTTTCCCATTGTTGTTTCTTCAATTGCAAAGAAGACTCAGGCTTCATATTCCTTGCGTGATCCTTCTGATGTGCTGGCTTTCTTGATTCGTTTAACAAGATGGAAGAAGAACATGTTACAAAAACTTAAGTAA 837 0.3871 MSVAEGKEIVVFLDYDGTLSPIVDDPDKAYMSDAMRAAVREVAYCFPTAIVSGRRKDKVYEFVKLRNVYYAGSHGMDISTPSGSSKCEDQKHQIKGVDEKGNHVVHFHPAKEFLPTIQEIIKVLKENTRRIKGSMIEDNMFCVTVHYRCVKNEEDISVLREMVESTMKSYSNFHISSGRKVMEIRPNVNWDKGCALMYLLDTLGFDNFNNVLPIYLGDDRTDEDAFKVIRHIGQGFPIVVSSIAKKTQASYSLRDPSDVLAFLIRLTRWKKNMLQKLK 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00546 278 SUPERFAMILY HAD-like 10 271 IPR036412 -
Vian9g00546 278 Pfam Trehalose-phosphatase 12 257 IPR003337 GO:0003824|GO:0005992
Vian9g00546 278 CDD HAD_TPP 10 261 - -
Vian9g00546 278 NCBIfam trehalose-phosphatase 7 267 IPR003337 GO:0003824|GO:0005992
Vian9g00546 278 FunFam Trehalose 6-phosphate phosphatase 116 276 - -
Vian9g00546 278 FunFam - 9 61 - -
Vian9g00546 278 NCBIfam HAD-IIB family hydrolase 11 233 IPR006379 -
Vian9g00546 278 Gene3D - 110 277 IPR023214 -
Vian9g00546 278 Gene3D - 9 108 IPR023214 -
Vian9g00546 278 FunFam Trehalose 6-phosphate phosphatase 110 187 - -
Vian9g00546 278 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 2 274 IPR044651 GO:0004805|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00546 Vian-Chr9 6259407 6264411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00546 10 263 Trehalose Biosynthesis Gene Families AT1G60140 24.719 2.02e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00546 K01087 - gmx:100799466 467.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00546 9 6259407 6264411 Vian9g00546 9 6259407 6264411 ECH