Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00530 ATGAAGATTGAGGTGGGGTTGGGAGGGGTGTGGAATGAGGAAGAGAAAGCGACGGTAGTGGAGGTTCTGGGTCGCGGCGCGTTTGATTACTTGGTGGCGAATTCGGTTTCTAACGAGAATCTGTTAATGGCGTTTGGGAGCGGCGAGAATCTGCAGAACAAGCTTTCGGATCTCGTGGAGCGTACTAACGCGTCGAACTTCAGTTGGAACTACGCGATCTTCTGGCAAATTTCGCAGTCCAAGTTTGGGGATTGGGTTTTGGGGTGGGGAGATGGTTGTTGCAGGGAACCGCGGGAGGGAGAAGAGAGCGGAGAAGTGAGAGGGAGAGGGGTTGTTGCTGACGACGAGAAGGTGCAGAGGATGAGGAAGAGGGTGTTGCAGAAGCTGCACATGACTTTTGGGGGTTCTGACGAGGACAATTATGCTTTTGGGTTGGACCGTGTTACTGACACGGAGATGTTCTTTCTTGCTTCCATGTACTTCTCTTTTCCCCGTGGACTAGGGGGTCCAGGTAAGTGTTTTGCTTCTGGGAAGCATTTGTGGCTTTCGGATGTGTTCAAATCTAGTTTTGATTACTGTGTGAGGTCTTTTTTGGCCAAATCTGCTGGAATTCAGACTGTTGTTTTAGTGCCTACTGATATGGGGGTGGTGGAGATGGGGTCTGTGAGGATGGTGGGTGAGAGTTTTGAGCTTTTGCAGGCTTTGAAGTCTGTGTTTTCTGCACAGGCATCGTTGGTCCCTCTCAGGATTAAGCCAATTACACCATTTGATTTGGTGAGTGAGAAGAGAGATGATAATGCAAATGCCCCTTTTTCTGGTGTGGCAATTGGGGATAAGGAAAAGAATAACAGCAGCAATGCTAGTAATAATAGAGTAGAAGGAAACGGAGTTCCAAAGATTTTTGGGCAAGATTTGAACAGTGTGACTCAATTCAGAGAGAAACTTGCTGTAAGGAAAATGGAAGAGAGGCCGAGGGCGTGGGGAGCTCATCCCAATGGGAATAGTGTTGGTTTTCCAAATGGTATCCATGGTTCTGGTTGGGGGGCCGGTCAAGTTGTGAGACAGCTTGGTCCTCCTGAAATTCATGCTCCTAGGTTGTCCACCTCCGGTGCATTGTCGGTGCCGGAGCTGGCCAATGGCACGAGGCATGATTTTGTGCATAACAATTATCAGCAGCAGCAACGGAAGGCTCAGATGCAAATTGATTTCTCAGGAGCAACTTCAAGGGCTTCGGGGAGATCAATCATTGCGGAATCTGAGATTTCTGATGTTGAGGCATCGTGCAAGGAGGAGAGAGCGAATGTTGCCGATGACAGGAGGCCGAGGAAACGGGGAAGGAAGCCGGCCAATGGAAGGGAGGAGCCCCTCAACCATGTGGAGGCAGAGAGGCAAAGGAGGGAGAAGCTAAACCAGCGGTTCTATGCCCTGCGTGCGGTTGTTCCAAATATCTCAAAGATGGACAAAGCATCTCTATTGGGAGATGCTATTGCTTACATCAATGAACTTCAAGCGAAACTCAAGACGATGGAGTCTGAGAGAGAGAGATTTGGAAGCACTTCTATGGATGGATCAGTGGTGGAGGCCAATGCAAGATCAGAAAATCATAGTAATGGAATTTCTGATGTGAATGTTGAAGCTGCACAAGATGGGGTGGTAGTAAAGGTGAGCTGCCCTATTGATGTTCACCCGGTTTCAAAAGTCATTCAAACCTTCAAAGAAGCAGATATTGGTGTTGTTGATTCAAAACTTACTGCTGCAAATGATACTGTTTTCCATACATTTGTAGTTAAATCTCAGGGACCTGATCAGCTGACCAAGGAAAAGTTGATTGCATTGTTTTCCAAAGAATCCAACCCCATACAGACATTGTGA 1872 0.4776 MKIEVGLGGVWNEEEKATVVEVLGRGAFDYLVANSVSNENLLMAFGSGENLQNKLSDLVERTNASNFSWNYAIFWQISQSKFGDWVLGWGDGCCREPREGEESGEVRGRGVVADDEKVQRMRKRVLQKLHMTFGGSDEDNYAFGLDRVTDTEMFFLASMYFSFPRGLGGPGKCFASGKHLWLSDVFKSSFDYCVRSFLAKSAGIQTVVLVPTDMGVVEMGSVRMVGESFELLQALKSVFSAQASLVPLRIKPITPFDLVSEKRDDNANAPFSGVAIGDKEKNNSSNASNNRVEGNGVPKIFGQDLNSVTQFREKLAVRKMEERPRAWGAHPNGNSVGFPNGIHGSGWGAGQVVRQLGPPEIHAPRLSTSGALSVPELANGTRHDFVHNNYQQQQRKAQMQIDFSGATSRASGRSIIAESEISDVEASCKEERANVADDRRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKTMESERERFGSTSMDGSVVEANARSENHSNGISDVNVEAAQDGVVVKVSCPIDVHPVSKVIQTFKEADIGVVDSKLTAANDTVFHTFVVKSQGPDQLTKEKLIALFSKESNPIQTL 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00530 623 SMART finulus 459 508 IPR011598 GO:0046983
Vian9g00530 623 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 453 502 IPR011598 GO:0046983
Vian9g00530 623 CDD bHLH_AtAIB_like 450 515 - -
Vian9g00530 623 Gene3D - 446 518 IPR036638 GO:0046983
Vian9g00530 623 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 51 239 IPR025610 -
Vian9g00530 623 MobiDBLite consensus disorder prediction 430 464 - -
Vian9g00530 623 MobiDBLite consensus disorder prediction 269 298 - -
Vian9g00530 623 FunFam Transcription factor bHLH13 446 520 - -
Vian9g00530 623 MobiDBLite consensus disorder prediction 278 293 - -
Vian9g00530 623 Pfam Helix-loop-helix DNA-binding domain 457 503 IPR011598 GO:0046983
Vian9g00530 623 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 456 516 IPR036638 GO:0046983
Vian9g00530 623 PANTHER MYC 39 611 IPR045084 GO:0003700|GO:0006355
Vian9g00530 623 Coils Coil 492 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00530 Vian-Chr9 5882137 5884008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00530 10 622 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 51.558 0.0 575
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian9g00530 bHLH-MYC_N 3.1e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00530 - - gmx:100807078 992.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00530 9 5882137 5884008 Vian9g00530 9 5882137 5884008 ECH
Vian6g01066 6 27988985 27990820 Vian9g00530 9 5882137 5884008 PCT