Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00515 ATGGACAGCCCACTTTCCAAATTGCAAAAGCTATTCAAATTAGTAGGGTTGCACAAAGGTCCATGGACTCCTAAAGAAGATGCATTGCTTACAAAGTATATCCAAGCTCATGGAGAAGGCCAATGGAAATCACTACCCAAAAAAGCTGGGCTTCTTAGATGTGGGAAAAGTTGCAGATTGAGATGGATGAATTATCTGAGACCTGATATAAAGAGAGGAAACATAACCCCAGAAGAAGATGATCTTATAATCAGAATGCATTCACTTTTGGGGAATAGATGGTCCCTCATAGCAGGAAGATTACCAGGCAGAACCGACAATGAAATAAAGAACTATTGGAACACCCATCTCTGCAAAAAGCTGAAAAATCAAACAGGAGAAGATACTGAGACACCCAATTCCTTGGAGAGTCCTCAGCAAGAACCTGCAAGTGGCAGCAAAAAGAAGAAGAACGGTGGCAAAAAGAAGAACAAGCAGAAGAACAAAGGAGACAAAGATAATGCAGAGCCACCAAAGACACAAGTTTACCTACCAAAACCAATCAGAGTGAAGGCTTTGTATTTGCCAAGAACAGATAGTAATAACACATACACCTTTGATTCCAACTCGGCAAGTGCATCAACAAACCAAGAAAAGGAAGAAAGCCCCTTGACAAAAGAATCAAACTTGGCTAGTGAATTTAGAAATGTGGGAGAAAGTGATGATTTTGGCTTCTTCAGTGAGGACCATGACCTGGTCAATGCCTCTGATATGGAATGCCACTCTTATTTTCCTTCAGATCATGGCTCTCTGCAACAACTGTATGAAGAATATTACCACCTCCTGAACATGGATCATAGCCAATTCATCGAAATGAGTTCATTTGGGGAATCTCTATTCACTTGA 885 0.4068 MDSPLSKLQKLFKLVGLHKGPWTPKEDALLTKYIQAHGEGQWKSLPKKAGLLRCGKSCRLRWMNYLRPDIKRGNITPEEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLCKKLKNQTGEDTETPNSLESPQQEPASGSKKKKNGGKKKNKQKNKGDKDNAEPPKTQVYLPKPIRVKALYLPRTDSNNTYTFDSNSASASTNQEKEESPLTKESNLASEFRNVGESDDFGFFSEDHDLVNASDMECHSYFPSDHGSLQQLYEEYYHLLNMDHSQFIEMSSFGESLFT 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00515 294 MobiDBLite consensus disorder prediction 192 212 - -
Vian9g00515 294 MobiDBLite consensus disorder prediction 192 217 - -
Vian9g00515 294 ProSiteProfiles Myb-like domain profile. 19 66 IPR001005 -
Vian9g00515 294 Gene3D - 19 71 - -
Vian9g00515 294 Pfam Myb-like DNA-binding domain 72 117 IPR001005 -
Vian9g00515 294 Pfam Myb-like DNA-binding domain 19 66 IPR001005 -
Vian9g00515 294 CDD SANT 76 117 IPR001005 -
Vian9g00515 294 SMART sant 18 68 IPR001005 -
Vian9g00515 294 SMART sant 71 119 IPR001005 -
Vian9g00515 294 Gene3D - 74 141 - -
Vian9g00515 294 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Vian9g00515 294 FunFam MYB transcription factor 73 133 - -
Vian9g00515 294 FunFam Myb transcription factor 16 72 - -
Vian9g00515 294 SUPERFAMILY Homeodomain-like 16 113 IPR009057 -
Vian9g00515 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Vian9g00515 294 MobiDBLite consensus disorder prediction 127 146 - -
Vian9g00515 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 66 IPR017930 -
Vian9g00515 294 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 14 223 - -
Vian9g00515 294 CDD SANT 21 66 IPR001005 -
Vian9g00515 294 MobiDBLite consensus disorder prediction 124 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00515 Vian-Chr9 5620844 5623492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00515 15 147 MYB Transcription Factor Family AT3G13540 63.768 2.74e-60 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian9g00515 Myb_DNA-binding 9.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00515 K09422 - gmx:100101857 443.351