Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00509 ATGAGGCCGATTTTTGCTGGAAACTTGGAGTACGATACTCGTCAATCGGAGCTTGAAAGATTGTTTTCAAAGTATGGAAGGATTGACCGCGTGGACATGAAATCTGGTTTTGCTTTTGTCTATTATGAGGATGAGCGTGATGCAGAAGAAGCAATTCGTGCACTTGACAATGTTCCATTTGGTCATGAAAAGCGGAGGCTATCTGTGGAGTGGGCTAGGGGTGAACGAGGACGCCATCGTGATGGATCAAAGGCAAACCAGAGGCCAACAAAAACCCTGTTTGTGATTAACTTTGATCCAATCCGGACTAGAGTTCGGGATATAGAAAAACACTTTGAACCATATGGAAATGTTCTTCACGTCCGGATTCGCCGGAACTTTGCTTTTGTGCAGTTTGAAACGCAAGAAGATGCCACTAAAGCATTAGAGTGTACAAATATGAGTAAGATCCTGGACAGAGTGGTGTCTGTGGAGTATGCTTTGAGGGATGATGGTGAGAGGGGTGACAATTATGATAGTCCCAGGAGAGGAGGTTATGATAGATCACCCAGTCCAGTTTATCACAGGCGACCAAGCCCCGACTATGGTCGTCCACGCAGTCCTGTCTATGATAGGTATAATGGTGGACCTGACAGGCGGAGGAGTCCTGATTATGGCAGACACAGAAGTCCTGATTATGGCAGACACAGAAGTCCTGATTATGGCAGGCGCAGGAGTCCTGATTATGGCAGGCGCAGGAGTCCTGATTATGGAAAGCCAAGGAGTCCTGATTATGTGAAGCCAAGGAGTCCTGATTATGTGAAGCCGAGGAGTCCTGATTTTGGGAAGCCGAGGAGTCCTGATTTTGGGAAGCCGAGGAGTCCTGATTTTGGGAAGCCAAGGAGTCCTGAATATGGTAGATTTCGCAGCCGTTCTCCAGTGCGCAGGTCTAGAACGTAA 939 0.475 MRPIFAGNLEYDTRQSELERLFSKYGRIDRVDMKSGFAFVYYEDERDAEEAIRALDNVPFGHEKRRLSVEWARGERGRHRDGSKANQRPTKTLFVINFDPIRTRVRDIEKHFEPYGNVLHVRIRRNFAFVQFETQEDATKALECTNMSKILDRVVSVEYALRDDGERGDNYDSPRRGGYDRSPSPVYHRRPSPDYGRPRSPVYDRYNGGPDRRRSPDYGRHRSPDYGRHRSPDYGRRRSPDYGRRRSPDYGKPRSPDYVKPRSPDYVKPRSPDFGKPRSPDFGKPRSPDFGKPRSPEYGRFRSRSPVRRSRT 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00509 312 MobiDBLite consensus disorder prediction 164 312 - -
Vian9g00509 312 Gene3D - 1 83 IPR012677 -
Vian9g00509 312 Gene3D - 84 173 IPR012677 -
Vian9g00509 312 Pfam Cornifin (SPRR) family 214 297 - -
Vian9g00509 312 CDD RRM2_AtRSp31_like 92 161 - -
Vian9g00509 312 SUPERFAMILY RNA-binding domain, RBD 3 165 IPR035979 GO:0003676
Vian9g00509 312 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 91 300 - -
Vian9g00509 312 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 155 IPR000504 GO:0003723
Vian9g00509 312 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Vian9g00509 312 MobiDBLite consensus disorder prediction 206 304 - -
Vian9g00509 312 SMART rrm1_1 92 158 IPR000504 GO:0003723
Vian9g00509 312 SMART rrm1_1 3 70 IPR000504 GO:0003723
Vian9g00509 312 FunFam Serine/arginine-rich splicing factor RS31 1 84 - -
Vian9g00509 312 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 162 IPR000504 GO:0003723
Vian9g00509 312 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Vian9g00509 312 FunFam Serine/arginine-rich splicing factor RS31 85 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00509 Vian-Chr9 5545545 5548021 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00509 4 164 Eukaryotic Initiation Factors Gene Family AT1G49760 23.626 3.54e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00509 K12893 - gmx:100797709 488.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00509 9 5545545 5548021 Vian9g00509 9 5545545 5548021 ECH