Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00507 ATGATGGTTGTAGATCTTTTATCTTCTGGTTCTGCTGGAACTGCCATTTCTCAAACTGTAGAGATCATTGCTGAGTTCGTAGTTAATGCTAAAAATGTTCTTGTGAAAAAGGATAGTTTTAATGAACTTGGTGCTTACATGGAAAGAATTAAGCCTGTCTTGGAAGAGTTGAAGAAAGGAAAAGTCAGTGATTCTGAGTCATTCAACAAAGCCATTGAGACCATGAACAAAGAAATTAAAGATGCAAAGGTACTAGCAGAAGAGTGCAGCAAGAAGAGCAAGGTTTATCTACTAATGAACTGCAGGTCCATTGCTAAGAAGATAGAGGATCACACAAAACAGCTGAGTTGGGCACTTAGTCTTCTTCCTTTAGCCACAACAGGTCTTTCTTCAGGAATAGTTGAAGATATTGAAAAGCTATGTGACAGCATGCAGACATCTGGATTTAAAGAAGCTCTAGATGAAGAAGCGATTTTAGATAAAATTGACTCAGGGATTAGGGAAAACAATGTTGATCGTTCCCATGCAAACAAAATGCTACTTCTCATAGCTGAAGCTGTTGGCATTAGGAATGAGAGTTCAACAATAAAGTTGGAACTTGAAGAGTTTAAGAGTGAAATTGAAAAGGCCCGGGATAGGAAGGAGTTAGCTGAAGCTATGCAGATGGATCAAATCATTGCTTTGTTGGAAAGGGCTGATGCAGCTTCATCCCCTAGGGAAAAGGAACGCAGATACTTTGCGAAACGCCAATCTTTGGGTAGTCAAATATTGGAGCCTTTGCAGTCATTTTATTGCCCCATCACCCAGGATGTTATGGTGGATCCTGTTGAAATTTCATCTGGGCAGACATTTGAGAGAAGTGCCATAGAAAAGTGGTTTGCAGAAGGAAATAAATTGTGCCCCTTGACCTTGATTCCCCTGGACACATCAGTTTTGAGACCTAACAAAATGTTGAAACGATCCATACAAGAGTGGAAGGACAGAAATACAATGATTACAATTGCTACATTGAAAGAAAAAATCCTGTCTGGAAATGATGTGGAAGTGCTGCATGATCTGCAGACTGTTCAGAATTTGTGTGAAGAAAAAGAACAACACAGGGAATGGGTCATTCTGGAGGGTTACATCCTAACTCTCATTCAAACTATATCAAGAAACCGTGATATAAGAAGACATTCTCTTTCCATCCTTGGCATGCTGGCAAAGGATAGTGAAGAAGCTAAGGTAAAAATTTCAACCGTAGATGGTGCAATTGAATCAATTGTTCGGTCTCTTGGACGTAATATAGTGGAAAGGAAGTTAGCAGTAGCTTTGCTGCTTGAACTGTCCAAATATGATTTGGCACTAGAACACATTGGAAAAGTTCAAGGTTGCATACTACTATTGGTGACTATGTCTAGTGGAGATGACAATCAAGCTGCTAGAGATGCAACGGAGTTATTGGAGAATCTGTCATACTCTGATCAGAATGTTATTCAGATGACAAAAGTAAATTACTTCAAGCATTTATTGCAGCGTCTCTCCACAGGACCAGAAGATGTAAAGATGATTATGGCCAAAACTTTAGCAGAAATGGAGTTAAATGACCATAATAGAGAGTCCTTGTTTGATGGTGGTGTACTGGTTCCTCTTCTAGAAATGTTCTCACACAATGATCTTAAGGTGAAAACAGTTGCTATCAAAGCTCTTAAGAATTTATCCAATTCAAAGAAAAATGGACAGGAAATGATAAGACAGGGGGCTGCACGGCCACTACTTAACCTTCTTTTCAACCAAAGCATATACACTGCAAGTTTGTGGGAAGATCTAACAACCATAATCGTGCAACTTGCTACATCAACTATCTCGCAGGACTCTCAAACACCTGTTTTATTGCTAGATTCTGATGATGATGTTTTCAATCTCTTCAATTTAGTTAATGTCACAGAGCCTGTTGTGCAACAGAACATTATCCAGACCTTTTATGCCTTGTGTCAAACACCCTCGGCATCGTGTATCAGAACCAAACTGAAAGAGTACCCAGCTGTTCCAAAATTGGTTCAACTGTGCGAGAATGAAAACCAAAACCTACGAGCAAGTGCTGTAAAGTTGTTTTCTTGCTTGGTGGAGAATTGTGATGAAGCCATCATACAGGAGAGCGTGAACCAGAGATGCATCAATACTCTACTCCGGATCATAAAATCTTCATCTGATGATGAGGAAAAACTTTCTGCCATGGGAATTATATGCTATCTTCCAGAAACTGACCAGATAACTAGATGGCTTCTGGATGCTGGGGCACTGGAAATCATTAAAAGTTGTGTCCAAGATGGGAAAGACAGGGATCATCAAAGGAGAACTTTAGTTGAGAATGCCATTGGTGCCCTTTGTCGTTTTACTGTTCCAACAAACATGGAATGGCAAAAAAGTGCAGCTGAAACAGGAATCATAACTGTTTTGGTGCAACTGCTTGAAAATGGAACCACCTTGACAAAACAACGCGTGGCGCAGTGTCTTGCTCAATTTTCTAGAAGCTCATTTCTGCTAAGCAGGCCAATACCAAAGCGCAAAGGACTATGGTGTTTCTCAGCTCATGCTGATATTGGCTGCATGGTTCATGGTGGAATATGCTCAGTCAAATCATCATTTTGTCTCTTGGAGGCCAATGCAGTGGGACCACTCACAAGAACTCTTGAGGAATCTGATCCTGGAGTTTGTGAAGCTTCTTTGGATGCCCTTTTAACGTTGATAGAAGGTGAAAGACTGCAGCATGGTAGTAAAGTGCTTGCAGATGCAAATGCCATACCACTCATAATCAAGTATCTTGGTTCACACTCCCCTGGCTTGCTAGAGAAGTCTCTAAATGCTTTGGAAAGGATTTTCCGGCTGGTCGAATTCAAACAGAAGTATGGAGCCTCAGCTCAAATGCCTCTGGTTGATTTGACTCAGAGAGGTAATGGTAGTGTTAGATCCATGTCAGCTAGAATATTGGCACAGTTGAACGTACTTCATGATCAATCTTCATACTTCTAA 3012 0.4047 MMVVDLLSSGSAGTAISQTVEIIAEFVVNAKNVLVKKDSFNELGAYMERIKPVLEELKKGKVSDSESFNKAIETMNKEIKDAKVLAEECSKKSKVYLLMNCRSIAKKIEDHTKQLSWALSLLPLATTGLSSGIVEDIEKLCDSMQTSGFKEALDEEAILDKIDSGIRENNVDRSHANKMLLLIAEAVGIRNESSTIKLELEEFKSEIEKARDRKELAEAMQMDQIIALLERADAASSPREKERRYFAKRQSLGSQILEPLQSFYCPITQDVMVDPVEISSGQTFERSAIEKWFAEGNKLCPLTLIPLDTSVLRPNKMLKRSIQEWKDRNTMITIATLKEKILSGNDVEVLHDLQTVQNLCEEKEQHREWVILEGYILTLIQTISRNRDIRRHSLSILGMLAKDSEEAKVKISTVDGAIESIVRSLGRNIVERKLAVALLLELSKYDLALEHIGKVQGCILLLVTMSSGDDNQAARDATELLENLSYSDQNVIQMTKVNYFKHLLQRLSTGPEDVKMIMAKTLAEMELNDHNRESLFDGGVLVPLLEMFSHNDLKVKTVAIKALKNLSNSKKNGQEMIRQGAARPLLNLLFNQSIYTASLWEDLTTIIVQLATSTISQDSQTPVLLLDSDDDVFNLFNLVNVTEPVVQQNIIQTFYALCQTPSASCIRTKLKEYPAVPKLVQLCENENQNLRASAVKLFSCLVENCDEAIIQESVNQRCINTLLRIIKSSSDDEEKLSAMGIICYLPETDQITRWLLDAGALEIIKSCVQDGKDRDHQRRTLVENAIGALCRFTVPTNMEWQKSAAETGIITVLVQLLENGTTLTKQRVAQCLAQFSRSSFLLSRPIPKRKGLWCFSAHADIGCMVHGGICSVKSSFCLLEANAVGPLTRTLEESDPGVCEASLDALLTLIEGERLQHGSKVLADANAIPLIIKYLGSHSPGLLEKSLNALERIFRLVEFKQKYGASAQMPLVDLTQRGNGSVRSMSARILAQLNVLHDQSSYF 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00507 1003 Coils Coil 193 220 - -
Vian9g00507 1003 CDD MLKL_NTD 15 127 - -
Vian9g00507 1003 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 14 1003 - -
Vian9g00507 1003 CDD RING-Ubox_PUB 263 312 IPR045210 -
Vian9g00507 1003 SMART arm_5 915 955 IPR000225 GO:0005515
Vian9g00507 1003 SMART arm_5 871 911 IPR000225 GO:0005515
Vian9g00507 1003 SMART arm_5 569 620 IPR000225 GO:0005515
Vian9g00507 1003 SMART arm_5 528 568 IPR000225 GO:0005515
Vian9g00507 1003 SMART arm_5 445 486 IPR000225 GO:0005515
Vian9g00507 1003 SMART arm_5 748 794 IPR000225 GO:0005515
Vian9g00507 1003 SMART arm_5 797 837 IPR000225 GO:0005515
Vian9g00507 1003 SMART arm_5 363 402 IPR000225 GO:0005515
Vian9g00507 1003 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 539 581 IPR000225 GO:0005515
Vian9g00507 1003 Gene3D - 330 429 IPR011989 -
Vian9g00507 1003 Pfam U-box domain 263 329 IPR003613 GO:0004842|GO:0016567
Vian9g00507 1003 Coils Coil 72 92 - -
Vian9g00507 1003 Gene3D - 630 844 IPR011989 -
Vian9g00507 1003 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 12 117 IPR008808 -
Vian9g00507 1003 SUPERFAMILY RING/U-box 248 331 - -
Vian9g00507 1003 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842|GO:0016567
Vian9g00507 1003 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 329 IPR013083 -
Vian9g00507 1003 SUPERFAMILY ARM repeat 343 993 IPR016024 -
Vian9g00507 1003 SMART Ubox_2 262 325 IPR003613 GO:0004842|GO:0016567
Vian9g00507 1003 Gene3D - 14 126 IPR036537 GO:0007166
Vian9g00507 1003 Gene3D - 868 1001 IPR011989 -
Vian9g00507 1003 ProSiteProfiles RPW8 domain profile. 1 156 IPR008808 -
Vian9g00507 1003 Gene3D - 430 624 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00507 Vian-Chr9 5522961 5529968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00507 250 1003 U-box Gene Family AT1G76390 28.377 7.80e-63 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00507 - - gmx:100799969 1630.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00507 9 5522961 5529968 Vian9g00507 9 5522961 5529968 ECH