Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00495 ATGGAATATACTTATTCAGCAGAGGGTGCAGAGGCTGAAACTTACACCAGTAGCAGCACCACCCCATCAAGTGGCATCAGATCAAAGAAGAAAAGCAACAACACAAGAAGGTTCAGTGATGATCAAATCAAATCTTTGGAAACCATGTTTGAGACAGAGTCAAGGCTAGAGCCTAGAAAGAAGTTGCAGCTGGCAAGAGACCTTGGATTGCAGCCAAGACAGGTTGCTATATGGTTTCAGAACAAGAGAGCTAGGTGGAAGTCAAAGCAACTCGAGAGAGACTATGGTATACTACAATCCAATTACAACAGTTTAGCCTCACGTTTTGAAGCTCTCAAGAAGGAAAAACAAACATTACTAATTCAGTTGCAGAAGCTGAATCATCTAATGCAGAAGCCATTGGAGGCAGGTCAGAGTCGGACACAAGTTGAAGCAGCAAACAGAATGGACAGTGAATCAGAAAATGGAGGCACCATGAAATGTGAGCTCGAGGAAAAGCCAAGCCCATCCATAGAAAGATCAGAACATGCACACGGCGTTCTGTCTGATGATGATGCTAGCATAAAGGTGGAACACTTTGGCCTAGAAGATGAACATGGTCTCTTGAACTTTGCTGAGCATGCTGATGACTCCTTGACTTCACCGGAAGATTGGAGTGCTTTCGAATCCGATGGTCTCTTAGGCCAAACGACCAGTGATTACCAATGGTGGGACTTCTGGTCCTGA 726 0.4463 MEYTYSAEGAEAETYTSSSTTPSSGIRSKKKSNNTRRFSDDQIKSLETMFETESRLEPRKKLQLARDLGLQPRQVAIWFQNKRARWKSKQLERDYGILQSNYNSLASRFEALKKEKQTLLIQLQKLNHLMQKPLEAGQSRTQVEAANRMDSESENGGTMKCELEEKPSPSIERSEHAHGVLSDDDASIKVEHFGLEDEHGLLNFAEHADDSLTSPEDWSAFESDGLLGQTTSDYQWWDFWS 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00495 241 Coils Coil 109 129 - -
Vian9g00495 241 MobiDBLite consensus disorder prediction 1 42 - -
Vian9g00495 241 PRINTS Lambda-repressor HTH signature 69 85 IPR000047 GO:0003677
Vian9g00495 241 PRINTS Lambda-repressor HTH signature 60 69 IPR000047 GO:0003677
Vian9g00495 241 Gene3D - 18 98 - -
Vian9g00495 241 CDD homeodomain 36 90 IPR001356 GO:0003677
Vian9g00495 241 SMART HOX_1 32 93 IPR001356 GO:0003677
Vian9g00495 241 MobiDBLite consensus disorder prediction 10 29 - -
Vian9g00495 241 ProSitePatterns 'Homeobox' domain signature. 64 87 IPR017970 GO:0000981|GO:0006355
Vian9g00495 241 FunFam Homeobox-leucine zipper protein ATHB-7 16 89 - -
Vian9g00495 241 Pfam Homeobox associated leucine zipper 89 131 IPR003106 GO:0006355|GO:0043565
Vian9g00495 241 ProSiteProfiles 'Homeobox' domain profile. 29 89 IPR001356 GO:0003677
Vian9g00495 241 Pfam Homeodomain 36 87 IPR001356 GO:0003677
Vian9g00495 241 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 29 172 IPR045224 GO:0003700
Vian9g00495 241 SUPERFAMILY Homeodomain-like 14 91 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00495 Vian-Chr9 5303273 5304196 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00495 19 241 Homeobox Transcription Factor Family AT2G46680 49.012 2.17e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vian9g00495 Homeodomain 2.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00495 K09338 - gmx:100797862 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00495 9 5303273 5304196 Vian9g00495 9 5303273 5304196 ECH
Vian6g01089 6 28278567 28279577 Vian9g00495 9 5303273 5304196 PCT