Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00490 ATGGAGGAACTCATCATCTCCCCTTCCTCATCCTCCTCTTTGGTCACTCTACCCCATCAAAACCCAACACCATCTATTCAACAAAACCTCCAATTTCTCCTTCAAACCCAACCCGATTGGTGGGTCTACGCCATTTTCTGGCAGGCTTCACACGACGACAATGGCAACCTTTTCCTCTCCTTCGGAGAAGGTCATTTCCAAGGCACCAAAGAAACTTCTCCAAAATTCTCAATCCCCCTTTCCACCAAGAAGTTCCCCAAAACCCCCACAACAGAAAACATCAACGATGCCGAGTGGTTCTACGTCATGTCGTTGACTCGAACGTTTCCCGTCAACAATTCTTCTTCTTCGACCTCTACCACTCCTTCCTCACTCCTTGGCAAATCTTTTGCTCTGGGCTCTGTGCTGTGGCTCAATAGCAAACACGAGCTCCAATTCTACAAGTGCGAGAGATCAAACGAGGCACAGTTGCACGGGATCCAAACGTTGATCTCCATCCCCACACAAAACGGCGTCATCGAAATGGGATCCTACGACAGCATCAAACAAAACTGGAACCTCGTCCATCACGTCAAGTCTCTCTTCCAACCCCTCCCAGATCCGCTTCCCGTTCAACTCCTCAACGACCACACCATCTCCTTCGCTGACATCGGCGTTGTCGCCGGAACCCAAGAAACCAAAAAGCGAAAACAAACCCAAACACCACCCAACAACCAAAAGGACAGCTACGTAGACTCCGAACACTCTGATTCGGATTGTCCAACGCTGCCAACCACCTCCACCCCGACAGCCTCGGAGCCCAAAAAACGTGGCAGAAAACCTGTTCTCGGCCGCGACACACCAATGAACCACGTGGAGGCTGAGCGGCAACGGAGGGAGAAGCTGAACCATCGCTTCTACGCGCTACGCGCTGTGGTTCCGAACGTTTCGAGGATGGACAAGGCTTCGTTGTTGTCCGATGCTGTCGCTTACATCAACGAGCTCAAAGCGAAGATTGAGTACTTGGAATCGCAGCAACAAAGAGAGGGTAATAAAAGAGTGAAGACAGAAATGATGGATACCATGGATAATCAGAGCACCGCCACTACGTCCACCATCGTAGACCAAGGGAGACCTGGTCCTGGAGGCCCATGCCCATTCGGTCTCGAGATCGATGTGAAGATCGTGGGGCCTGATGCCATGGTGAGGGTGCAATCCGAAAATGCGAACCACCCCGGGGCGAGGCTAATGGGTGCATTGAGAGACCTAGAGTTCCAGGTTCATCACGCTAGCATGTCGTGCGTCAACGATCTCATGCTTCAGGACGTGGTGATCAATGTCCCTGATGGAATGAGGAGCGAAGAGAGTCTTAAATCTGCCATTCTCATGAGGTTGGATCAGTGA 1383 0.5141 MEELIISPSSSSSLVTLPHQNPTPSIQQNLQFLLQTQPDWWVYAIFWQASHDDNGNLFLSFGEGHFQGTKETSPKFSIPLSTKKFPKTPTTENINDAEWFYVMSLTRTFPVNNSSSSTSTTPSSLLGKSFALGSVLWLNSKHELQFYKCERSNEAQLHGIQTLISIPTQNGVIEMGSYDSIKQNWNLVHHVKSLFQPLPDPLPVQLLNDHTISFADIGVVAGTQETKKRKQTQTPPNNQKDSYVDSEHSDSDCPTLPTTSTPTASEPKKRGRKPVLGRDTPMNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVAYINELKAKIEYLESQQQREGNKRVKTEMMDTMDNQSTATTSTIVDQGRPGPGGPCPFGLEIDVKIVGPDAMVRVQSENANHPGARLMGALRDLEFQVHHASMSCVNDLMLQDVVINVPDGMRSEESLKSAILMRLDQ 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00490 460 SMART finulus 285 334 IPR011598 GO:0046983
Vian9g00490 460 MobiDBLite consensus disorder prediction 1 20 - -
Vian9g00490 460 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 279 328 IPR011598 GO:0046983
Vian9g00490 460 Pfam Helix-loop-helix DNA-binding domain 283 328 IPR011598 GO:0046983
Vian9g00490 460 MobiDBLite consensus disorder prediction 249 265 - -
Vian9g00490 460 Gene3D - 277 344 IPR036638 GO:0046983
Vian9g00490 460 MobiDBLite consensus disorder prediction 225 291 - -
Vian9g00490 460 MobiDBLite consensus disorder prediction 266 291 - -
Vian9g00490 460 PANTHER MYC 20 457 IPR045084 GO:0003700|GO:0006355
Vian9g00490 460 CDD bHLH_AtAIB_like 277 353 - -
Vian9g00490 460 MobiDBLite consensus disorder prediction 225 242 - -
Vian9g00490 460 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 27 195 IPR025610 -
Vian9g00490 460 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 279 341 IPR036638 GO:0046983
Vian9g00490 460 Coils Coil 325 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00490 Vian-Chr9 5196638 5198020 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00490 22 458 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 37.472 9.02e-75 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian9g00490 bHLH-MYC_N 1.3e-44 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00490 - K13422 var:108347008 847.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00490 9 5196638 5198020 Vian9g00490 9 5196638 5198020 ECH