Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00485 ATGGGGAAGAAGGGAAGTGGTAGTTCGTGGTTAACTGCTGTCAAAAGGGCATTCAGATCTCCCACCAAAGACAGTGACAAAAGGAGTGGTAGAAGAAGAGAAGACTGTGATCAAGAAGAAGACGAAGAAAAGAAAAGGGAAAAGAGAAGATGGATTTTCAGGAAGACTCACATGAGTCAAGAAGGAGTGAACAACAACAACAGTACTCAACAAAAGTTGAAGCATGATGTGGCGGCAGCTGGTGGGGTTTCAAGGACAGACCAGGATCAGAAGCATGCACTTGCGGTGGCCGTGGCCACAGCAGAAGCTGCCATGGCGACCGCTCAGGCTGCGGTGGAGGTGGCAAGGTTGAACAAACCTGCTAGCCATGCAAGGGAGCATTATGCTGCTGTTGTGATCCAAACAGCTTTCAGAGGGTATCTGGCCAGAAGAGCACTTCGTGCACTAAAGGGGTTGGTGAAGTTGCAAGCTTTGGTTAGGGGTCACAATGTTAGGAAGCAGGCAAAGATGACTCTTAGATGCATGCAGGCTTTGGTTAGAGTTCAAGCAAGGGTCCTTGACCAGCGCATAAGGTCTTCACTTGACGGTAGCAGAAAATCCACTTTCAGTGACACCGCCAGTGTTTGGGACTCTCGGTATCTTCAGGATATTTCAGATAGGAAATCAGTATCAAGAGAGGGGAGCAGCATTGCAGATGACTGGGATGAACGTCCACACACAGTTGAAGAAGTGAAGGCTATGTTGCAGCAGAGGAAGGAAGCTGCACTGAAGAGAGACAAGACCTTGTCCCACGCCTTTTCTCAACAGATTTGGAGGAATGGTAGGACATCATCAATTGGAAACGAAGATGAGTTGGAAGAGAGACCAAAATGGCTAGATCGGTGGATGGCCACAAAGCCATGGGAAAACAGAGGAAGAGCTTCAACTGATCAGAGAGACCCAATCAAGACTGTGGAGATTGACACATCTCAGCCATATTCATATCTAGGAACCAATTACAGAAGATCACATCCAAATTATCAATATAACCCAAACCACCATCAACCACAAAGGCATTCCATTGGTTCACCACTCCACAGATCTCACCAAAATGGATCCCTTCACCAGTCCCCTGCAACCCCTTCTCCTTCCAAATCAAGACCCATCCAAGTCCGGTCAGCAAGCCCTCGTTGCATCAGAGAAGACAGAAACTACCCCACTTCCCAAACACCAAGCTTGAGGTCAAATTACCATTACACTGGAAACTTGTACCAAAATGGAAGGGCTGTGGGAACTGGAAGTAGTAGTAGTAATGGTGCTACATTGCCGAATTACATGGCGGCAACGGAGTCTGCAAAGGCTCGAATCCGGTCACAAAGCGCGCCGAGGCAGAGGCCGTCGACACCAGAGAGGGACAGGGTTGGATCAGCAAAGAAAAGGCTTTCTTTTCCTGCTCCTGACCCTTATAGCGTGGGAGTGAGTTATGGAAATTACGGGCACAGTTTGAGGAGTCCAAGCTTCAAGAGTGTGAGTGGATCACACTTTGGGTTGGAGCGGCAGTCAAATTACTCCTCTTGCTGCACTGAAAGTCTTGGTGGTGGTGAGGTTTCTCCTTCTTCAACCGGTGACCTTAGGAGGTGGTTGAGATGA 1629 0.4843 MGKKGSGSSWLTAVKRAFRSPTKDSDKRSGRRREDCDQEEDEEKKREKRRWIFRKTHMSQEGVNNNNSTQQKLKHDVAAAGGVSRTDQDQKHALAVAVATAEAAMATAQAAVEVARLNKPASHAREHYAAVVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRIRSSLDGSRKSTFSDTASVWDSRYLQDISDRKSVSREGSSIADDWDERPHTVEEVKAMLQQRKEAALKRDKTLSHAFSQQIWRNGRTSSIGNEDELEERPKWLDRWMATKPWENRGRASTDQRDPIKTVEIDTSQPYSYLGTNYRRSHPNYQYNPNHHQPQRHSIGSPLHRSHQNGSLHQSPATPSPSKSRPIQVRSASPRCIREDRNYPTSQTPSLRSNYHYTGNLYQNGRAVGTGSSSSNGATLPNYMAATESAKARIRSQSAPRQRPSTPERDRVGSAKKRLSFPAPDPYSVGVSYGNYGHSLRSPSFKSVSGSHFGLERQSNYSSCCTESLGGGEVSPSSTGDLRRWLR 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00485 542 SMART iq_5 125 147 IPR000048 GO:0005515
Vian9g00485 542 SMART iq_5 148 169 IPR000048 GO:0005515
Vian9g00485 542 Pfam Protein of unknown function (DUF4005) 388 491 IPR025064 -
Vian9g00485 542 MobiDBLite consensus disorder prediction 19 49 - -
Vian9g00485 542 MobiDBLite consensus disorder prediction 504 530 - -
Vian9g00485 542 Pfam IQ calmodulin-binding motif 129 147 IPR000048 GO:0005515
Vian9g00485 542 Pfam IQ calmodulin-binding motif 153 169 IPR000048 GO:0005515
Vian9g00485 542 ProSiteProfiles IQ motif profile. 150 177 IPR000048 GO:0005515
Vian9g00485 542 FunFam IQ-domain 11 125 176 - -
Vian9g00485 542 MobiDBLite consensus disorder prediction 302 317 - -
Vian9g00485 542 MobiDBLite consensus disorder prediction 58 72 - -
Vian9g00485 542 MobiDBLite consensus disorder prediction 443 476 - -
Vian9g00485 542 Gene3D - 123 178 - -
Vian9g00485 542 PANTHER IQ-DOMAIN 5-RELATED 1 478 - -
Vian9g00485 542 MobiDBLite consensus disorder prediction 318 384 - -
Vian9g00485 542 MobiDBLite consensus disorder prediction 504 542 - -
Vian9g00485 542 MobiDBLite consensus disorder prediction 302 412 - -
Vian9g00485 542 ProSiteProfiles IQ motif profile. 126 154 IPR000048 GO:0005515
Vian9g00485 542 MobiDBLite consensus disorder prediction 395 412 - -
Vian9g00485 542 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00485 Vian-Chr9 5087661 5089927 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00485 10 542 IQD Protein Family AT4G00820 58.484 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00485 - - gmx:100786729 957.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00485 9 5087661 5089927 Vian9g00485 9 5087661 5089927 ECH