Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00484 ATGTCTCAACAAAAGCAAGCTCAGATGGTAGGTGGTAACAACCAGGAGCAATATAATGACACAACTTTTACCAAAATCTTTGTTGGAGGGTTGGCTTGGGAGACTCAGAGGGACACAATGAGGAGGTATTTTGAGCAATTTGGAGAGATCTTGGAGGCTGTTGTGATCACTGATAAGAACACTGGGAGATCCAAGGGTTATGGCTTTGTCACATTTAAGGATCCTGAGGCAGCCATGAGAGCATGTCAGAACCCATCTCCAGTTATTGATGGAAGAAGGGCTAACTGCAATCTTGCTTCTCTTGGTGCAAACAAGAACCGACCACCAACTTTTCAGCATGGTCCATTCCTTACGTTAGGTTCAGGACGGTTCAGGCCTCCACCACCTGCTTATCATGGTTCTTCATCTACTGCTACATTTTCCCATCAACCCCCTAGGCAATACTCATTTCCTTATTCAGCTTACGGATATTCTGGATATTCACAAGACAACTTGTATCCTATGAACTACTATAATGTCTATGGAGTTCAACAATTTTCAGCTTACTACCCATCTGCTGGAGCTTCTGGTGCAGTAGGGTTGATCCATAATATTTATCCCTTTTATGGTCAATATGCACAGAGTATTCAGGCTCATGGTTTTGGGGTTCAATACCCTCAAATGGCACAGTTTCCATTTTTGCCTGACCCTTATGGCTCCACTGGGATATTGTCATATCCTTCTTCAGTATCAGTGCCAACTACTACTGCAGTTTCAGTAACAGGAACTGCTACCACAACTATAACACCAACAACATCAACTGGTGTGACAGCAACAGTGGCTGGTAGTTCACAAGCCTCACAAGCAGCTTCTGAACAAAATTCTACATCTTCGAAGATACAGAACATGCAAGGCTAA 897 0.4337 MSQQKQAQMVGGNNQEQYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASLGANKNRPPTFQHGPFLTLGSGRFRPPPPAYHGSSSTATFSHQPPRQYSFPYSAYGYSGYSQDNLYPMNYYNVYGVQQFSAYYPSAGASGAVGLIHNIYPFYGQYAQSIQAHGFGVQYPQMAQFPFLPDPYGSTGILSYPSSVSVPTTTAVSVTGTATTTITPTTSTGVTATVAGSSQASQAASEQNSTSSKIQNMQG 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00484 298 FunFam RNA-binding protein 24-B isoform X1 11 116 - -
Vian9g00484 298 MobiDBLite consensus disorder prediction 278 298 - -
Vian9g00484 298 SUPERFAMILY RNA-binding domain, RBD 12 123 IPR035979 GO:0003676
Vian9g00484 298 PANTHER BOULE-RELATED 9 294 - -
Vian9g00484 298 Gene3D - 1 110 IPR012677 -
Vian9g00484 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
Vian9g00484 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 83 IPR000504 GO:0003723
Vian9g00484 298 CDD RRM_RBM24_RBM38_like 24 99 - -
Vian9g00484 298 SMART rrm1_1 25 97 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00484 Vian-Chr9 5071237 5072844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00484 20 100 C2H2 Transcription Factor Family AT2G19380 44.444 3.80e-16 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00484 - - pvu:PHAVU_010G118600g 476.863