Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00478 ATGGATGGTGGTAACATCAATTCAAGTGAACACATTGATACAACTTCTACCAAAATCTTTGTTGGAGGTTTAGCTTGGGAAACTCAAAGGGACACAGTGAGAAGGTATTTTGAGCAGTTTGGAGAGATTTTAGAGGCTGTTGTTATCACAGATAAGAACACTGGAAGATCCAAGGGTTATGGTTTTATCACATTCAAGGATCCTGAGGTAGCAATGAAAGCAGTTCAAAACCCATATCCAATAATTGATGGACGGAAGACAAATTGCAACATTGCATCTATTGGTGCAAACAAGAATCGCAGACAGGCTCCACAACATGGCTGGTTTAGAGAAGCACCTGGTTTATTGGCTTCACCTGTTTATCATGATCCTTTCTCTGCATTTTTCCATGAAAACAATGGACAATACACAATTCCTAATTCAACTTTTGGATATATTCAACCTTCACATGACATGATGTACCCGATGATGAACTGTTATGGAGTACTTGGAGAGCAACAGTTCTCAACTTACTACCCCTACATTGGACCATCTGAACCTATAAGATTGGTCCATAACACTTACCCTTTTTTTTCTCAGTATGCACACAATATCGAAGCTCAAGGTTTTGGATTCCATTATCCCCAAATGATGCATTCTCCAGTTATTCCTAGGCACTATGACTCACCTGTTACCAGAACTGCAACAACAAAAAGAGAGACACTAAGAACATGTGCAGATGCTTCACAAACCAGTGAAATAACTTCTGAACAAGATTCTTCAGCTGAATCTTCGCATAAATAA 783 0.3908 MDGGNINSSEHIDTTSTKIFVGGLAWETQRDTVRRYFEQFGEILEAVVITDKNTGRSKGYGFITFKDPEVAMKAVQNPYPIIDGRKTNCNIASIGANKNRRQAPQHGWFREAPGLLASPVYHDPFSAFFHENNGQYTIPNSTFGYIQPSHDMMYPMMNCYGVLGEQQFSTYYPYIGPSEPIRLVHNTYPFFSQYAHNIEAQGFGFHYPQMMHSPVIPRHYDSPVTRTATTKRETLRTCADASQTSEITSEQDSSAESSHK 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00478 260 PANTHER BOULE-RELATED 11 242 - -
Vian9g00478 260 SMART rrm1_1 18 90 IPR000504 GO:0003723
Vian9g00478 260 MobiDBLite consensus disorder prediction 234 260 - -
Vian9g00478 260 CDD RRM_RBM24_RBM38_like 17 92 - -
Vian9g00478 260 MobiDBLite consensus disorder prediction 234 252 - -
Vian9g00478 260 Gene3D - 5 107 IPR012677 -
Vian9g00478 260 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 94 IPR000504 GO:0003723
Vian9g00478 260 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 77 IPR000504 GO:0003723
Vian9g00478 260 SUPERFAMILY RNA-binding domain, RBD 10 107 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00478 Vian-Chr9 4918075 4919519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00478 6 93 C2H2 Transcription Factor Family AT2G19380 40.909 6.20e-16 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00478 - - gmx:100782484 335.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00478 9 4918075 4919519 Vian9g00478 9 4918075 4919519 ECH