Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00474 ATGCCACACACCCTTTTTCACACTTTCTTTACACCACCTTCTTCTTCTTATGTGCTACCCTTCAAACTGTACAAACCCCAAGTGAAACGATTCGTTTTACATTTCGGGCTTCCACGGCGTTCCCGCACATCTCCAGAACCTTCATCATCTTCTTCTTTCACTTCGCAGAGGAAAACTAGGGAGGTGGTTGAAGAACGGATTAATGGAGAAGAATCTGTTTACCCTCAAAAAGGTGATGGTTTAGTGGATGAAGAAGATAACGAAAGGCTTGGAAAATCGTGTGAAGTGTACGTGTGCAACCTCCCCAGAAGCTGTGATGCAGCATACTTGCTTGACTTGTTCAGGCCATATGGGACCATTCTATCGGTTGAGGTTTGCCGAAATGATGAGACTAATGAAAGTAAGGGTTGTGGTTACGTGACACTGGGATCTGTATACTCAGCAAGAAATGCAGTTGCTACATTGGATGGATCAGTTGATGTTGATGGGCGCGAAATGAGGGTTAGATTTTCAATTGAGGTGAATTCTAGAAGGAGGGGTTTTAATAAAGCGAACTCTTCCACCAAGAGGATCTTATACTATGAATCTTCTCATAAGCTGTATGTTGGCAATCTTCCTAAGACAATGAGACCTGAACAGCTGAGAGATCACTTTAGCAGATTTGGAAATATAGTTGGTGCCAGAGTATTGCTTGATTTTAAACAAGGGAAAAGTCGAGCCTATGCCTTTCTCTCCTTTCAATTAGAGGCGGAACGTGATGCAGCAATGTCTCTCAATGGAACAGAATTTTATGGTCGAACACTAATAGTTAAAGAGGGTGTTGAGAGGACAGAGCCTTTAACTGAAGCTTCAGTGTCTGCATAA 864 0.4259 MPHTLFHTFFTPPSSSYVLPFKLYKPQVKRFVLHFGLPRRSRTSPEPSSSSSFTSQRKTREVVEERINGEESVYPQKGDGLVDEEDNERLGKSCEVYVCNLPRSCDAAYLLDLFRPYGTILSVEVCRNDETNESKGCGYVTLGSVYSARNAVATLDGSVDVDGREMRVRFSIEVNSRRRGFNKANSSTKRILYYESSHKLYVGNLPKTMRPEQLRDHFSRFGNIVGARVLLDFKQGKSRAYAFLSFQLEAERDAAMSLNGTEFYGRTLIVKEGVERTEPLTEASVSA 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00474 287 SUPERFAMILY RNA-binding domain, RBD 88 181 IPR035979 GO:0003676
Vian9g00474 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 198 275 IPR000504 GO:0003723
Vian9g00474 287 PANTHER OS02G0815200 PROTEIN 43 271 - -
Vian9g00474 287 MobiDBLite consensus disorder prediction 58 82 - -
Vian9g00474 287 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 46 178 - -
Vian9g00474 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 173 IPR000504 GO:0003723
Vian9g00474 287 SUPERFAMILY RNA-binding domain, RBD 195 277 IPR035979 GO:0003676
Vian9g00474 287 Gene3D - 38 176 IPR012677 -
Vian9g00474 287 Gene3D - 177 280 IPR012677 -
Vian9g00474 287 MobiDBLite consensus disorder prediction 42 57 - -
Vian9g00474 287 SMART rrm1_1 199 271 IPR000504 GO:0003723
Vian9g00474 287 SMART rrm1_1 95 169 IPR000504 GO:0003723
Vian9g00474 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 166 IPR000504 GO:0003723
Vian9g00474 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 200 268 IPR000504 GO:0003723
Vian9g00474 287 MobiDBLite consensus disorder prediction 39 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00474 Vian-Chr9 4874996 4876568 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00474 81 278 Eukaryotic Initiation Factors Gene Family AT1G22760 31.156 6.25e-17 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00474 - - vra:106780336 510.76